Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0285 ATGAGTCTAATAATAGTGGAAAAGAAGGGACCAATAGTGGAAAGGAAGAAGTTGGTGAAAGGGAGGGTGGTATTGATCCGGAAAAATGTTGTTCAAACCATGAGCGCTGTCCAGGGTCTCTTTGCCACTGGCAAAACCATCATTGACTCATCATCCCAACTTGATTTCACTAAATCTGTGTCTTTCAAGTTGATCAGTCGTACCAACTCAAACAACATTTTAGNTTCNGCTGGGAAAGTTGGAAAGNAAACNTATNTGGAAAANAATATTTCTGTGTNACGAACNTNGGGAGAGAGAGNGGAGGAATTTGATATTTATTTTGAATGGGATGATNAAGAAATGGGAATTCCAGGAGCATTTTACGTAAAAAGCCTAATGGATNANGAGTTTTTACTTGTTAGTGTGACTCTTGAATATCCAACTCAAAGAAATGAGCACGACCATAACCACGACCAGAACTATATTCACTTTGACTGTAACTCCTGGGTTTACAACCATAAGTTTTACAAAACGGATCGCATTTTCTTTGCCAACATTCCATATCTTCCTGGTAAGACACCGGAGCAATTAAAAGCGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATAGAAAAGGAAAGCGTGAGAAATGGGATAGGATTTATGATTATGATGTGTATAATGATCTGGGCTTTCTTGAAAGCGATGGACCAAAAGATCACCCAGTTCTTGGAGGTCTCAAATATCCCTACCCTCGTAGGCTTAGGACGGGGAGACCCGTCATCGAAAGAAATGGTGAAGAATACGAGGTACCAGGCGAGGTTAATTATGTGCCAAGAGATGAAGATTTCAGTCAGGAGAAGACTTTAGAATTCCTTTCATTAGGAAGGACAAATTTAGCTGCAAGAGTCGAACCTTTGCTCCTTTCTTTATATTTAAAGATCACATCAAATGAATTTAATGGCTTCGAAGAAGTGGATAAAATGTATGAAGGTGGAGTTGATCTGCCTCTGTCTATCACTGCCAACGGTACGCCGAGTGTTATCACTGGCAAAGGTACTCCGACTGTCATTGACTTCCCAATACCCGCTGTAATTAAAGAAAGCAAGTTTGCATGGATGACTGATGAAGAGTTTGCAAGAGAGATGATTGCCGGTGTAAACCCTGCTGTAATTCGCCTTCTTAAAAAGGAGGAGCTCGCATTGCCAGGGAACAAATCACGAAGTACAGTAACAAAAGAAACTTTGGAGATTAACATGAATGGGGTCAAAGTAGACGAGGCATTTGCTGATAGGAGATTGTTCATATTGGATTACTATGACGCATTCATGGCGTATTTGACGAAGATAAATGAGCTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTAAGCAAGCCACATGATCATCCGAATGTCGAGACTAGAGTGGTGCTGCCTGCAGATAAAGGTGTTGAAAGTACAATTTGGCAACTGGCCAAAGCTCATGTTACTGTAAATGACACCAACTATCATCAAGTCATTAGCCACTGGTTACATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACACACAGGAATCTCAGTGTACTTCACCCCATTTATAAACTCCTTCATCCTCACTTCCGTGACACATTAAATATCAATTCACTTGCCAGGAAATCCCTAATTAATGCGGGTAGCATTATAGAGCAATCTTTTTTGCCTGGACCGTATTCAATGGAGATGACTTCTGCTGTATACAAGAGTTGGGTTTTCACTGACCAAGCTTTACCAAAGGATCTCATCAAAAGAGGGTTGGCGGTTGAGGATATCACTGCCCCTCATGGCCTTAGACTTGCGATAGAGGACTATCCTTATGCTGTTGATGGACTAGAAATATGGAATGCTACTAAGAAGTGGGTACAAGAGTATTTGTATCTGTACTATTCAGAAGAGGGGGCAGTTCAAGGAGATACTGAATTGCAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGCAGATCTATGGCCAAAAATGCATACTTCTAATGATCTGGTGGAGATTTGCACTACCATTATATGGATTGCTTCAGCTCTTCATGCCTCTGTTAATTTTGGACAGTATCCTTATGGAGGTTATATCATGAACCGTCCTACACAAAGCCGAAGATGGATCCCAGAAGCAGGAACTGAAGAGTATGATGAGATGAGCAAGAATCCTCAAGAAGCTTTTCTGAAAACAATTACTCCAAAGTATCAGACTGTTATGGATCTTACAGTGATGGAGCTACTATCAACGCATGCTTCGGACGAGGTATATCTTGGACAAAGGAACAGTCTGAATTGGACTGCTGATCAACATGCAAAAGAAATATTTCAAGAATTTACAGAAAACCTAGCAAAAATTGAGAAAGAAATCTCGGTCAGGAACAACAACAAAGAACTCAAAAACCGAACCGGACCAATCAAATTGCCTTACACTGTGTTTCTTCCTAACAGTGAACCAGGGATGACTTTCAGAGGAATCCCTAACAGTGTCTCTATCTAA 2577 0.4075 MSLIIVEKKGPIVERKKLVKGRVVLIRKNVVQTMSAVQGLFATGKTIIDSSSQLDFTKSVSFKLISRTNSNNILXSAGKVGKXTYXEXNISVXRTXGERXEEFDIYFEWDDXEMGIPGAFYVKSLMDXEFLLVSVTLEYPTQRNEHDHNHDQNYIHFDCNSWVYNHKFYKTDRIFFANIPYLPGKTPEQLKAYREEELKNLRGDRKGKREKWDRIYDYDVYNDLGFLESDGPKDHPVLGGLKYPYPRRLRTGRPVIERNGEEYEVPGEVNYVPRDEDFSQEKTLEFLSLGRTNLAARVEPLLLSLYLKITSNEFNGFEEVDKMYEGGVDLPLSITANGTPSVITGKGTPTVIDFPIPAVIKESKFAWMTDEEFAREMIAGVNPAVIRLLKKEELALPGNKSRSTVTKETLEINMNGVKVDEAFADRRLFILDYYDAFMAYLTKINELPSAKAYATRTFLFLKDDGTLKPLAIELSKPHDHPNVETRVVLPADKGVESTIWQLAKAHVTVNDTNYHQVISHWLHTHAVMEPFAIATHRNLSVLHPIYKLLHPHFRDTLNINSLARKSLINAGSIIEQSFLPGPYSMEMTSAVYKSWVFTDQALPKDLIKRGLAVEDITAPHGLRLAIEDYPYAVDGLEIWNATKKWVQEYLYLYYSEEGAVQGDTELQAWWKEAVEKGHGDLKADLWPKMHTSNDLVEICTTIIWIASALHASVNFGQYPYGGYIMNRPTQSRRWIPEAGTEEYDEMSKNPQEAFLKTITPKYQTVMDLTVMELLSTHASDEVYLGQRNSLNWTADQHAKEIFQEFTENLAKIEKEISVRNNNKELKNRTGPIKLPYTVFLPNSEPGMTFRGIPNSVSI* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0285 858 Pfam Lipoxygenase 190 841 IPR013819 GO:0016702|GO:0046872
Vra9g0285 858 Pfam PLAT/LH2 domain 67 176 IPR001024 GO:0005515
Vra9g0285 858 Gene3D PLAT/LH2 domain 9 181 - -
Vra9g0285 858 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 180 858 IPR013819 GO:0016702|GO:0046872
Vra9g0285 858 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Vra9g0285 858 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Vra9g0285 858 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Vra9g0285 858 Gene3D - 365 492 - -
Vra9g0285 858 Gene3D - 282 364 IPR027433 -
Vra9g0285 858 SUPERFAMILY Lipoxigenase 182 858 IPR036226 -
Vra9g0285 858 SMART LH2_4 17 178 IPR001024 GO:0005515
Vra9g0285 858 ProSiteProfiles PLAT domain profile. 42 177 IPR001024 GO:0005515
Vra9g0285 858 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 36 858 - -
Vra9g0285 858 Gene3D - 182 281 - -
Vra9g0285 858 PRINTS Plant lipoxygenase signature 147 165 IPR001246 GO:0016491
Vra9g0285 858 PRINTS Plant lipoxygenase signature 173 194 IPR001246 GO:0016491
Vra9g0285 858 PRINTS Plant lipoxygenase signature 212 228 IPR001246 GO:0016491
Vra9g0285 858 PRINTS Plant lipoxygenase signature 244 263 IPR001246 GO:0016491
Vra9g0285 858 PRINTS Plant lipoxygenase signature 311 332 IPR001246 GO:0016491
Vra9g0285 858 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Vra9g0285 858 PRINTS Plant lipoxygenase signature 771 785 IPR001246 GO:0016491
Vra9g0285 858 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Vra9g0285 858 Gene3D - 493 857 - -
Vra9g0285 858 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 19 181 IPR036392 GO:0005515
Vra9g0285 858 ProSitePatterns Lipoxygenases iron-binding region signature 1. 515 529 IPR020833 GO:0016702|GO:0046872
Vra9g0285 858 PANTHER LIPOXYGENASE 36 858 IPR000907 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0285 Vra-Chr9 2151647 2155285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0285 19 858 Acyl Lipid Metabolism Gene Families AT3G22400 47.986 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0285 K15718 - gmx:100802685 1160.59