Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0284 ATGAGTCTAATAATAGTGGAAAGGAAGAAGTTGGTGAAGGGGAGGGTGGTATTGATCCGGAAAAATGTTGTTCAAACCATGAGCACTGTCCAGGGTATCTTTGCCACTGGCAAAACCATCATTGACTCATCATCCCAACTTGATTTCACTAAATCTGTGTCTTTCAAGTTGATCAGTCGTACCAACTCAAACAATCTTTTAGNTTCNGCTGGGAAAGTTGGAAAGNAAACNTATNTGGAAAANAATATTTCTGTGTNACGAACNTNGGGAGAGAGAGNGGAGGAATTTGATATTTATTTTGAATGGGATGATNAAGAAATGGGAATTCCAGGAGCATTTTACGTAAAAAGCCTAATGGATCAGGAGTTTTTACTTGTTAGTGTGACTCTTGAATATCCAACTCAAAGAAATGAGCACGACCATAACCACGACCAGAACTATATTCACTTTGACTGTAACTCCTGGGTTTACAACCATAAGTTTTACAAGACGGATCGCATTTTCTTTGCTAACATTCCATATCTTCCTGCTAAGACACCGGAGCAATTAAAAGCTTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATGGAAAAGGAAAGCGTGAGAAATGGGATAGGATTTATGATTATGATGTCTATAATGATCTGGGCTTTCTTGAAAGCGATGGACCACAAGATCACCCAGTTCTTGGAGGTCTCAAATATCCCTACCCTCGTAGGCTTAGGACGGGGAGACCCCTCATCGAAAGAAATGGAGAAGAATACGAGGTACCAGACGAGGTTAATTATGTGCCAAGAGATGAATATTTCAGTCAGGAGAAGACTGTAGAATTCCTTTCATTAGGAAGGACAAATTTAGCTGCAAGAGTCGAACCTTTGCTCCTTTCTTTATATTTAAAGATCACATCAAATGAATTTAATGGCTTCGAAGAAGTGGATAAAATGTATGAAGGTGGAGTTGGTCTGCCTCTCTCTATCACTGCCAACGGTACCCCGAGTGTCATTGATTTCCCAACACCCGGTGTAATTAAAGAAAGCAAGTTTGCATGGAATACTGATGAAGAGTTCGCAAGAGAGATGATTGCCGGTGTAAACCCTGCTGTAATTCGCCTTCTTAAAAAGGAGGAGCTCGCATTGCCAGGGAACAAATCACGAAGTACAGTAACAAAAGAAACTTTGGAGATTAACATGAATGGGGTCAAAGTAGACGAGGCATTTGCTGATAGGAGATTATTCATATTGGATTACTATGACGCATTCATGGCGTATTTGACGAAGATAAATGAGCTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTAAGCAAGCCACATGATCATCCGAATGTCGAGACTAGAGTGGTGCTGCCTGCAGATAAAGGTGTTGAAAGTACAATTTGGCAACTGGCCAAAGCTCATGTTACTGTAAATGACACCAACTATCATCAAGTCATTAGCCACTGGTTACATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACACACAGGAATCTCAGTGTACTTCACCCCATTTATAAACTCCTTCATCCTCACTTCCGTGACACATTAAATATCAATTCACTTGCCAGGAAATCCCTAATTAATGCGGGTAGCATTATAGAGCAATCTTTTTTGCCTGGACCGTATTCTATGGAGATGTCTTCTGCTGTATACAAGAATTGGGTTTTCTCTGAGCAAGCTTTACCAAAGGATCTCATCAAAAGAGGGTTGGCGGTTGAGGATATCACTGCCCCTCATGGCCTTAGACTTGCGATAGACGATTATCCTTATGCTGTTGATGGACTAGAAATATGGAATGCTACTAAGAAGTGGGTACAGGAGTATGTGTATCTGTACTATTCAGAAGAGGGAGCAGTTCAAGGAGATACTGAATTGCAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGCTGACTTAAAAGCAGATCTATGGCCTAAAATGGATACTTCTAATGATCTGGTGGAGATTTGCACTACCATTATATGGATTGCTTCAGCTCTTCATGCCGCTGTTAATTTTGGACAGTATCCTTATGGTGGTTATATCATGAACCGTCCTACACAAAGCCGAAGATGGATCCCAGAAGCAGGAACTGAAGAGTATGATGAGATGACCAAGAATCCTCAAGAAGCTTTTCTGAAAACAATTACTCCAAAGTACCAGACTGTTATGGCTCTTACTGTGATGGAGCTACTATCAACGCATGCTACGGACGAGGTATATCTTGGACAAAGGAACAGTCTGAATTGGACTGGTGATGAAAATGCAAAAGAAATATTTGAAGAATTTACAGGAAACCTAGCAAAAATTGAGAAAGAAATCTCGGACAGGAACGACAACGAAGAACTCAGAAACCGAACCGGACCAATCAAATTGCCTTATACTGTGCTTCTTCCTAACAGTGAACCGGGGATGACTTTCAGAGGAATCCCTAACAGTGTCTCTATCTAA 2529 0.4093 MSLIIVERKKLVKGRVVLIRKNVVQTMSTVQGIFATGKTIIDSSSQLDFTKSVSFKLISRTNSNNLLXSAGKVGKXTYXEXNISVXRTXGERXEEFDIYFEWDDXEMGIPGAFYVKSLMDQEFLLVSVTLEYPTQRNEHDHNHDQNYIHFDCNSWVYNHKFYKTDRIFFANIPYLPAKTPEQLKAYREEELKNLRGDGKGKREKWDRIYDYDVYNDLGFLESDGPQDHPVLGGLKYPYPRRLRTGRPLIERNGEEYEVPDEVNYVPRDEYFSQEKTVEFLSLGRTNLAARVEPLLLSLYLKITSNEFNGFEEVDKMYEGGVGLPLSITANGTPSVIDFPTPGVIKESKFAWNTDEEFAREMIAGVNPAVIRLLKKEELALPGNKSRSTVTKETLEINMNGVKVDEAFADRRLFILDYYDAFMAYLTKINELPSAKAYATRTFLFLKDDGTLKPLAIELSKPHDHPNVETRVVLPADKGVESTIWQLAKAHVTVNDTNYHQVISHWLHTHAVMEPFAIATHRNLSVLHPIYKLLHPHFRDTLNINSLARKSLINAGSIIEQSFLPGPYSMEMSSAVYKNWVFSEQALPKDLIKRGLAVEDITAPHGLRLAIDDYPYAVDGLEIWNATKKWVQEYVYLYYSEEGAVQGDTELQAWWKEAVEKGHADLKADLWPKMDTSNDLVEICTTIIWIASALHAAVNFGQYPYGGYIMNRPTQSRRWIPEAGTEEYDEMTKNPQEAFLKTITPKYQTVMALTVMELLSTHATDEVYLGQRNSLNWTGDENAKEIFEEFTGNLAKIEKEISDRNDNEELRNRTGPIKLPYTVLLPNSEPGMTFRGIPNSVSI* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0284 842 Gene3D - 477 841 - -
Vra9g0284 842 SMART LH2_4 10 171 IPR001024 GO:0005515
Vra9g0284 842 Gene3D - 175 274 - -
Vra9g0284 842 Gene3D - 349 476 - -
Vra9g0284 842 PANTHER LIPOXYGENASE 28 842 IPR000907 GO:0016702|GO:0046872
Vra9g0284 842 ProSitePatterns Lipoxygenases iron-binding region signature 1. 499 513 IPR020833 GO:0016702|GO:0046872
Vra9g0284 842 SUPERFAMILY Lipoxigenase 175 842 IPR036226 -
Vra9g0284 842 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 173 842 IPR013819 GO:0016702|GO:0046872
Vra9g0284 842 Pfam Lipoxygenase 183 825 IPR013819 GO:0016702|GO:0046872
Vra9g0284 842 ProSiteProfiles PLAT domain profile. 28 170 IPR001024 GO:0005515
Vra9g0284 842 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 174 IPR036392 GO:0005515
Vra9g0284 842 PRINTS Lipoxygenase signature 481 498 IPR013819 GO:0016702|GO:0046872
Vra9g0284 842 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Vra9g0284 842 PRINTS Lipoxygenase signature 519 539 IPR013819 GO:0016702|GO:0046872
Vra9g0284 842 Gene3D - 275 348 IPR027433 -
Vra9g0284 842 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 28 842 - -
Vra9g0284 842 Gene3D PLAT/LH2 domain 3 174 - -
Vra9g0284 842 Pfam PLAT/LH2 domain 60 169 IPR001024 GO:0005515
Vra9g0284 842 ProSitePatterns Lipoxygenases iron-binding region signature 2. 526 536 IPR020834 GO:0016702|GO:0046872
Vra9g0284 842 PRINTS Plant lipoxygenase signature 140 158 IPR001246 GO:0016491
Vra9g0284 842 PRINTS Plant lipoxygenase signature 166 187 IPR001246 GO:0016491
Vra9g0284 842 PRINTS Plant lipoxygenase signature 205 221 IPR001246 GO:0016491
Vra9g0284 842 PRINTS Plant lipoxygenase signature 237 256 IPR001246 GO:0016491
Vra9g0284 842 PRINTS Plant lipoxygenase signature 336 352 IPR001246 GO:0016491
Vra9g0284 842 PRINTS Plant lipoxygenase signature 437 461 IPR001246 GO:0016491
Vra9g0284 842 PRINTS Plant lipoxygenase signature 755 769 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0284 Vra-Chr9 2129951 2133552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0284 10 842 Acyl Lipid Metabolism Gene Families AT1G55020 49.307 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0284 K15718 - gmx:100802685 1163.67