Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0272 ATGAGTTCCTCCACGAAAAAGCACGACGTGTTCGTCAGCTTCAGAGGAGACGACACACGAACTAACTTCACTAGCCATCTTTGCAAAGCTCTCGAATATAAATCAATCGGAGCTTACATAGATTGCCAGCTAGACAGAGGAGAAAGTGTCTGGCCGGCACTTGCCAAAGCAATTCAGGACTCACATGTCTCAATTGTTGTTTTCTCCGAAAACTATGCTTGTTCCAAATGGTGTCTGGAAGAGCTGGTGAAAATTCTTGAATGCAGAAAAGAACTGGGTTTGGTAGTTATACCTGTCTTCTACAACATTGATCCATCAGACATAAGGAATCAGAAGGGTACTTACGAGAAGGCATTGTTGGAATCCGATGAAGAGAAAGGGCCAAAGTGGAAAGCTGCTCTCACTGAAGCAGCCAATATATCTGGATGGGACTCTAGGAAACATAGGGACGAAGCTCATGTCATTGAGAATGTTGTCAATGATGTATTGCAAAAGCTTCATCTGCGATGCCCCACTGCATTAAAGGGCCTTGTTGCAAGTGAAGAAAATTGCAGAAATGTAGATTTATTACTAAAATCGTGTAGGGTCATTGGAATTTGGGGTATGGGTGGAATTGGGGAAGTTGATGGCTCTATGTGTATTAAAGAGTGTGGGGTTGGCCTTATAAGTGTTTCAGAACTGCCGAGTGTTTTAGAAGAGTTGGACTGGCACTCGGATAAGAAGAAGGACTTCGTGGATATAGTGGAGTTGATAACAGGACAAAGGATAACCTTAACATCAATTGAACAATCCGATGAGAGGAAAAACCATTTCTCTGCTGTGGAAGAGATTATTAATTCTACCCACAAGGAAGTCAAAACCGATTCTGACACAGATTGTGGGCAGAATACTGCAATATCTACAAATGCGGTCAAATATGAAGGAAATAGAAAAACTGTTGAATCGGAGTTAGACAAAGAACATGAATCTAAAGAAAAGTCAATTGAAGACAACAGAGGGAGTAAAGAATATTTTTCTGATGTCGAAGAGAGCATTGAATATTGTGCTAGCAGTGCAACCAACGCAACTGCTAAAAGAGGTCCCAAAGAAAAATCTACAAAGTCTACGGGAACTGTAGCCAATGAACATGCACAGAGGTTGGAAGAATCGATTAAGCAAGTTGTAGAAATTCATGATACAGACAACTCTGGTATTAAATACTCATCCTTGGACCTTGAGAATTGCCTTCAACAGTTGGATGAAAATCCATTTGCAATCCTTGACTTACTTTCTTATGAATTATCCCCTTCACTGAAACAATCAAATGATGCTACAACCCTGCTCAATGAGTTCCGAACCTTAGTTTTCTCTACTTCGTTGCTAAAGAAAATTCCAGACCAATCCTATCAGCAGCAAGTTGCAGAATCACTACAGAAACTTCACACTTGTCGTGGAAAAATTACAAAAGAGCAAGAAGCTGGTTTAGACACATTTAGAGAGCTCTACAACAAAGCTGTCGACATTTCTCAAGATAAGATGTTAACCGAGGTTAACCAAGCAAAACTGGCATCTGAGAAGAGAGACTTGTACAACAAACTTGAACATTCTAAACTGAAAATTCAACAGTTTGACACCACCATCTCAACTTGTAAGTCTCAGAGGGAAAACCTCCAAAAGAGACAAAGGGAAATCCAGAAAGCTATAAAGACACTTCAACAAGAAAATGAAGCCTTGGAAAAGGATAGCTCAACACTAGAGGTTTTATACTCTGAACAACAAACCAAGAAGAAGGAAACACTTGAATCAGTGAAGTGTATTTCGATTTCTGTTGTTCAAACAACCAAACAATTAGAAGAACTTGAAAAGAAAAGATTGAGTTTGGCTTCAGCTTACGAAGACCTCAAAGAGCCATATCAAAGAATGAAGACAAAACCCCCATTTTAG 1923 0.3978 MSSSTKKHDVFVSFRGDDTRTNFTSHLCKALEYKSIGAYIDCQLDRGESVWPALAKAIQDSHVSIVVFSENYACSKWCLEELVKILECRKELGLVVIPVFYNIDPSDIRNQKGTYEKALLESDEEKGPKWKAALTEAANISGWDSRKHRDEAHVIENVVNDVLQKLHLRCPTALKGLVASEENCRNVDLLLKSCRVIGIWGMGGIGEVDGSMCIKECGVGLISVSELPSVLEELDWHSDKKKDFVDIVELITGQRITLTSIEQSDERKNHFSAVEEIINSTHKEVKTDSDTDCGQNTAISTNAVKYEGNRKTVESELDKEHESKEKSIEDNRGSKEYFSDVEESIEYCASSATNATAKRGPKEKSTKSTGTVANEHAQRLEESIKQVVEIHDTDNSGIKYSSLDLENCLQQLDENPFAILDLLSYELSPSLKQSNDATTLLNEFRTLVFSTSLLKKIPDQSYQQQVAESLQKLHTCRGKITKEQEAGLDTFRELYNKAVDISQDKMLTEVNQAKLASEKRDLYNKLEHSKLKIQQFDTTISTCKSQRENLQKRQREIQKAIKTLQQENEALEKDSSTLEVLYSEQQTKKKETLESVKCISISVVQTTKQLEELEKKRLSLASAYEDLKEPYQRMKTKPPF* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0272 640 MobiDBLite consensus disorder prediction 354 374 - -
Vra9g0272 640 ProSiteProfiles TIR domain profile. 6 166 IPR000157 GO:0007165
Vra9g0272 640 Pfam TIR domain 7 169 IPR000157 GO:0007165
Vra9g0272 640 MobiDBLite consensus disorder prediction 309 335 - -
Vra9g0272 640 PANTHER TMV RESISTANCE PROTEIN N-LIKE 4 174 - -
Vra9g0272 640 Coils Coil 543 581 - -
Vra9g0272 640 Coils Coil 603 623 - -
Vra9g0272 640 SMART till_3 7 140 IPR000157 GO:0007165
Vra9g0272 640 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 4 174 - -
Vra9g0272 640 MobiDBLite consensus disorder prediction 304 335 - -
Vra9g0272 640 Gene3D - 4 170 IPR035897 -
Vra9g0272 640 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 143 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0272 Vra-Chr9 2031415 2037786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0272 7 166 Miscellaneous Gene Families AT4G19920 35.329 2.35e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0272 - - vra:106773080 1264.21