Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0259 ATGATTGGAAGCTTCAACCAGACTGATTCAATTGAGTGCTGTGAAGCTGCAATGCAGAAATCTTATCCTCAGGAATCTGGTCCTGTCTTGAAGAAGTCAAAAACCAAAATTTTAGCTTCTCAAAATGTAGATTATTGTGAAATGGCAGAGAGCGAGGACAGGCTCAGTGACATGCCAGATTGTCTTATTCATCACATCTTGTCATTTCTGGAAACAAAGGATGCTATTCAAACTTCTGTTTTATCAAAGAGGTGGAGGTATCTTTGGGTTTCAGTTCCCTGCTTGAATTTCAGTAGCAAATCATTCACGCGGTTGGTTGACTTCAAGAAGTTTGTGCTGTGGGTTCTAAACCACCGTGATTCTTCTCATGTCAAACTTCTTGTTTACTATCGTTTTGGGGTAGATTATGCCACAGATCAACATCTATTGAATAAGGTTATTGAGTATGCAGCATCACATGGGGTTGAAGAAATCAAAATCAATCTCCGTGCAAAAACATCCGGTTGCAAATCATTGGACTTGTTGCATCTGGAACAGTTTGCAATGGATCCTGCTGCTGCTGACTTTTCAAATCCATTTGCAAGTTTGGCAGAGCTATTTGGTTTTACAACGTTGACAACTCTGCATCTAAATAACTTCACTCTGTGTTACACAGGAATTGACTGTCTGGATCCATTTGCTAATTGTGTCCATATGAAGAATTTGCACTTAAGTGAAATGTCTTTTAAGTCAGATTTGAACCCCAAGGATTTTGTGATATCTGCTCCCAAACTTAGCAACTTGAATCTAATGTGCAACCGCTTTAAATGCAAGATTGTAGTTGCTGCACCACAGCTTTCCAATTTCACTTACTTGTATTCTACACCTTGTGCTTTCTTTGAGTTCCGACTTCCATCTTTGGATGGCTTGATTATTGATATACATGAACCACATGATCGGTTTGAAAAATGTCGTCGAAGGAAAAGAGAGGAGACTCTACATGGTTTGATCAATATGTTACGGGGATTTCATAGTGCAGAAGCTGTTAAACTATCTTTCTGCACAGCTGCGGTTACTTGTGGGACTGCAGCCCTGTTAAAGCCAGAACGTTTACCTCCTAGTAAATTGAAGTCATTGAACTTTGGAGTGGGATCAACATATAAAATCTTCATCAACAACCTTGACCATATAACTGCCTACTTCCGCAATTGTTCTCAGCATGCAGACTTTGAGATTGTGGCTGTTTAG 1227 0.3969 MIGSFNQTDSIECCEAAMQKSYPQESGPVLKKSKTKILASQNVDYCEMAESEDRLSDMPDCLIHHILSFLETKDAIQTSVLSKRWRYLWVSVPCLNFSSKSFTRLVDFKKFVLWVLNHRDSSHVKLLVYYRFGVDYATDQHLLNKVIEYAASHGVEEIKINLRAKTSGCKSLDLLHLEQFAMDPAAADFSNPFASLAELFGFTTLTTLHLNNFTLCYTGIDCLDPFANCVHMKNLHLSEMSFKSDLNPKDFVISAPKLSNLNLMCNRFKCKIVVAAPQLSNFTYLYSTPCAFFEFRLPSLDGLIIDIHEPHDRFEKCRRRKREETLHGLINMLRGFHSAEAVKLSFCTAAVTCGTAALLKPERLPPSKLKSLNFGVGSTYKIFINNLDHITAYFRNCSQHADFEIVAV* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0259 408 PANTHER CYCLIN-LIKE F-BOX 39 166 - -
Vra9g0259 408 PANTHER CYCLIN-LIKE F-BOX 168 408 - -
Vra9g0259 408 Gene3D - 39 95 - -
Vra9g0259 408 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Vra9g0259 408 SUPERFAMILY L domain-like 191 293 - -
Vra9g0259 408 PANTHER F-BOX PROTEIN-LIKE 168 408 - -
Vra9g0259 408 PANTHER F-BOX PROTEIN-LIKE 39 166 - -
Vra9g0259 408 Gene3D Ribonuclease Inhibitor 135 303 IPR032675 -
Vra9g0259 408 SUPERFAMILY F-box domain 45 104 IPR036047 GO:0005515
Vra9g0259 408 Pfam F-box domain 55 91 IPR001810 GO:0005515
Vra9g0259 408 SMART fbox_2 58 98 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0259 Vra-Chr9 1918460 1922640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0259 51 171 EF-hand Containing Proteins AT5G41840 34.307 2.83e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0259 - - vun:114167379 778.089