Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0253 ATGTATCGATTAGCTAGAAAAGTAGCTTCTTCTTCCATTGCTTCTCCCTCCGCTAAGAACCTCGTATATGGTAGGTTGTTGTCGAGCAGAAACTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCTGCAATCCTCCAAGGTGTAACTCAGGTGGCTGATGCTGTGAAAGTAACCATGGGACCTAAGGGTCGCAATGTGATAATTGAGAGAAGCCGTGGGAATCCCAGGATCACGAAGGATGGTGTGACTGTGGCTAAAAGTATCAAATTTAAAGACAAAGAAAAAAATATCGGGGCTGATCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCCGGCGTAAATGTTATGGACTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATCACTGACTTGAAAAGCAGAGCATTGATGATAAGCACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAACGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAGGGAGTCATTACTGTTGTTGATGGGAATACTTTGGATAACGAGTTGGAAGTGGTGGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGACCAGAAGACCCGCAAATGTGAATTGGAGAACCCCTTTATTCTTATCCATGACAAGAAAATTTCAGACATGAATTCACTGCTGAAAATACTGGAACTTGCAGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTAGAGAGTGATGCACTGGCTATGCTCATACTCAACAAGCATCATGCTGGGCTTAAGGTTTGTGCCATAAAAGCTCCTGGTTTTGGGGACAGTAGAAGGGCAAATCTAGATGATCTTGCAACTCTTACCGGAGGAGAGGTGATCACAGAAGAGCGTGGTTTGTCCCTTGATAAAGTCCAATCAGAAATGCTTGGCACTGCAAGAAAGGTTACTGTCACCATTGATGACACTATTGTTCTACATGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAACAACTACGGACGGCTATGGAAAGGAGTTCTGCCGTGTTTGATAAAGAAAAAGCACAGGAACGACTATCGAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGAGGGGCTAGTGAGGCCGAGGTTGGAGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCTACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGTGTCGCTCTCTTATATGCTACCAAAGCCTTGGATAACCTTCAAACTAAAAACGAGGATGAGAAAAGAGGAGTACAGATTATACAGAATGCACTCAAGGCGCCTACATCTACAATAGCTTCCAATGCTGGTTTTGATGGTGCTTTGGTCCACAGTAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCCGCCAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCAGCCAGTGTTTCATTGCTACTGACTACAACCGAGGCAGCTGTGGTGGATAATCCACATGACAAAAATAAACCTCCTAGTCGAGTGCCAGATATGGATGATTTGGACCTATAA 1728 0.4334 MYRLARKVASSSIASPSAKNLVYGRLLSSRNFVSKDINFGVGARAAILQGVTQVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKEKNIGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVVDGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAIKAPGFGDSRRANLDDLATLTGGEVITEERGLSLDKVQSEMLGTARKVTVTIDDTIVLHGGGDKKAIEERCEQLRTAMERSSAVFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALDNLQTKNEDEKRGVQIIQNALKAPTSTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPHDKNKPPSRVPDMDDLDL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0253 575 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 SUPERFAMILY GroEL apical domain-like 215 407 IPR027409 -
Vra9g0253 575 Gene3D GroEL 223 404 IPR027409 -
Vra9g0253 575 TIGRFAM GroEL: chaperonin GroL 34 558 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 25 567 - -
Vra9g0253 575 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Vra9g0253 575 SUPERFAMILY GroEL equatorial domain-like 38 553 IPR027413 -
Vra9g0253 575 Coils Coil 370 390 - -
Vra9g0253 575 Gene3D - 37 554 IPR027413 -
Vra9g0253 575 MobiDBLite consensus disorder prediction 555 575 - -
Vra9g0253 575 Coils Coil 457 477 - -
Vra9g0253 575 CDD GroEL 35 555 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 25 567 - -
Vra9g0253 575 Hamap Chaperonin GroEL [groEL]. 33 573 IPR001844 GO:0042026|GO:0140662
Vra9g0253 575 Pfam TCP-1/cpn60 chaperonin family 54 555 IPR002423 GO:0005524
Vra9g0253 575 Gene3D - 168 441 IPR027410 -
Vra9g0253 575 SUPERFAMILY GroEL-intermediate domain like 169 235 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0253 Vra-Chr9 1865932 1872474 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0253 K04077 - gmx:100778935 1048.5