LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0243	ATGGAGTTTCCGCAGACGGGTGTATCGCTGAGATCGAGCTTGACTTTTGGAGAGACGCTGTGTGCGGTGTGCATTCCGCTCATAGGACTTGTTGAAGCTTTGGTTTTCAGCTTAGCTGGTTGCTTCGATTTCCATTTTCCGGCGAAGAAGAAACCGTCTTCTACTACCTTCGACAACATTCTCGCCCTCTCCAAGGACTCTCCGTTTACTGTTAATGAAATTGAGGCTTTGCATGAGTTGTTCAAGAAGTTGAGTAGCTCAATCATTGACGATGGTCTCATCCACAAGGAAGAACTCACATTGGCCCTGTTGAAGACCACAACTAAGGAGAATCTTTTCCTTGACAGGGTATTTGATGTTTTCGATGAAAAAAGAAATGGTGTCATAGAATTTGATGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGACTTTTCTTTTAGAATGTATGACTTGAGACAGACAGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTTTGTCAGAATGTGGCATGGATATGAAAGATGAAGCCCTTGATGCCATTATTGATAAGACATTTGAAGAAGCCGATACTGATAAAGATGACAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCACTCGACACCCAACACTCTTGAAACACATGACTCTTCCTCATCTGGCGGACATCAGCACACTGTTTACCAGTTTCATTTTCAACACCGAAGTTGATGATTCTCACTGGCACATTAATGGCAATCGTTAA	786	0.4173	MEFPQTGVSLRSSLTFGETLCAVCIPLIGLVEALVFSLAGCFDFHFPAKKKPSSTTFDNILALSKDSPFTVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTTTKENLFLDRVFDVFDEKRNGVIEFDEFVHALSIFHPCTPLEKKIDFSFRMYDLRQTGYIEREEVRQMVVAILSECGMDMKDEALDAIIDKTFEEADTDKDDKISKEEWKAFVTRHPTLLKHMTLPHLADISTLFTSFIFNTEVDDSHWHINGNR*	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0243	261	PANTHER	CALCINEURIN B	5	252	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Vra9g0243	261	ProSiteProfiles	EF-hand calcium-binding domain profile.	109	144	IPR002048	GO:0005509
	Vra9g0243	261	ProSitePatterns	EF-hand calcium-binding domain.	203	215	IPR018247	-
	Vra9g0243	261	SMART	efh_1	194	222	IPR002048	GO:0005509
	Vra9g0243	261	SMART	efh_1	150	178	IPR002048	GO:0005509
	Vra9g0243	261	SMART	efh_1	113	141	IPR002048	GO:0005509
	Vra9g0243	261	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	5	252	-	-
	Vra9g0243	261	Gene3D	-	61	253	-	-
	Vra9g0243	261	ProSiteProfiles	EF-hand calcium-binding domain profile.	190	225	IPR002048	GO:0005509
	Vra9g0243	261	SUPERFAMILY	EF-hand	63	242	IPR011992	-
	Vra9g0243	261	Pfam	EF-hand domain pair	149	218	IPR002048	GO:0005509
	Vra9g0243	261	CDD	EFh	150	220	IPR002048	GO:0005509
	Vra9g0243	261	Pfam	EF-hand domain pair	91	135	IPR002048	GO:0005509
	Vra9g0243	261	PRINTS	Recoverin family signature	117	138	-	-
	Vra9g0243	261	PRINTS	Recoverin family signature	164	182	-	-
	Vra9g0243	261	PRINTS	Recoverin family signature	210	230	-	-
	Vra9g0243	261	ProSiteProfiles	EF-hand calcium-binding domain profile.	146	181	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0243	Vra-Chr9	1775734	1778910	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0243	31	253	EF-hand Containing Proteins	AT5G55990	57.399	1.71e-87	258

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0243	K06268		-	gmx:100801943	441.039