Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0237 ATGACGATGATGGAGATTTTTAATGGATACGCTCATGATTTTTCAAAGATCTGTCTGAAGAATTTTGAGTTCACTTCTTTCTGTTCACAAAGGAGCATAATAGACACTATAAATCTAATTTTCATCTGTGTCTTCTACGCTTCCACCATTGTCAGTTTAATCAGAAGAAATTTTATAAATGGAAGTCATACCAAAAGCAGGTTTTTCCTTTTTGTCTCTATTTGTTGTGCGATCACTAGCGTTGTGTTTTATAGTATTGCCCTGTGGAGTCTCATAGCCAAAACTGGGAACTCCATGGCAAACCACCTTAGTTGGTTAGCATGCATTGTACGAGGTTTTGTTTGGACTTCTTTGGCAGTTTCTTTGCATGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCACTAGCTTCGGCTTTCCATATTGAAATTCTGTTTAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGCTCTTACACACGCTTCTTCTCTTCTGTGCCTTCCAAAACCTTGGTTACTTTGTCAATCAAAATGAGCTAAAAAGTTTATCTGAACCATTGTTATCTCGGGACGTTGACACAGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTAACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAAGCCACTATCTCTTGAAGACATCCCTTCCCTTCTTTCTGAAGATAAGGCAGCACTATCCCACCAAAACTTCATGCATGCATGGCAATCCCTTGTGAAGGAGACAAGCAAGAACAACACGAAGAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATATCTGTTTACGCATTGGTCAGAACCATTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAACAGTAGGAATTCCGGGAAGAGAAATCTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTGTGTCCCAAAGACACTGGTTTTTTTGTTCTAGGAGGTCAGGGTTGAAGATGAGATCAGCTCTGATGGTTTCAGTGTATGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACACGACACTCAACAGGTGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGCGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCAAGTTCTTCTTTGTATCGGTATCCTGTATGGAGTTCTGGGAGTAGGTGCACTTCTTGTTTTAATCCCTCTTCTTATATGTGGACTTATCAATGTACCATTTGTCAAGACCATGCAAAAGTGCACGACACAATTCATGATTTCACAGGACGAGCGTCTTAGAGCAACTTCAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACATATTCAAGAGTTTGGTTGAGAACCTACGTGCGAAAGAGTTCATTTGGCTATCTAAGGCACAAGTGTTGAAAGCTTTTGGGTCATTTTTATTTTGGGTGTCTCCTTCCATCGTTTCTGCTGTTATTTTCCTTGGTTGTGTTGTTTTCAATAGTGCTCCATTAAATGCTGGGACCATATTTACAGTTCTTTCAATGTTGAGGATCTTGGGAGAACCTGTTCGAATGATTCCTGAGGCTCTATCTATTTTGATCCAAGTTAAGGTATCTTTTGACCGTCTCAATACCTTTTTGTTTGACGAAGAACTAGATACCAGTGATGGAAGCAGAAGTTATACAAACCGAAGTTCAATTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGAACCATGAATCAGTGTCCCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAAAAAGTTGCAATTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTATTAGGAGAGATTCCTAAGATATCAGGAACTGTTAATGTGTTCGGAAACATAGCATATGTTTCTCAATCTTCTTGGATACAAAGTGGGACGGTTCGAGAGAATATACTATTCGGCAAGCCAATGGAGAAAACAAGATACGAGAGTGCCATTAGAGTTTGTGCCTTGGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGATCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTCTTCAAAGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACCGCTGGGACTGCATTTGAACAACTTGTGAGCGCTCATAAGGAAGCAATTAAAGAGTTGGATCAGAATAATGAGAACAAAACTAGTAGAGAAGAGTCTCAAGGTGTTTATAATAATCAAAGTGAGGGGGAGATTTCTACAGATGGTCAACTTGGGATGCAACTTACACAAGAAGAAGAAAAACAAATTGGTGACGTCGGCTTCAAGACATTATGGGATTATATTTCCTTTTCCAGGGGTCCATTGATGCTGTTTTATATAATTTTGACACAATTTGCTTTTATTGCTTTGCAGACTGCATCAACGTTTTGGCTTGCTTTTGCCATTGAAATTCCAAAAATAACTAGTGCTATCTTGATTGGTGTGTACGCATTAATTTCATTTTCTGGTGCTGCGTTTATATACATAAGGTGTCTCTTGACCTCTTACCTTGGATTAAATGCTTCCAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTATTTTGGATTTTGACATACCTTTTTCCATCACCTTTGTAACATGTGTACCAATTGAAATTTTGGTAATGATTGGCGTAATGGTTTTAGTGACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAATTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCAATTGGTGTTGTTACTGTGAGAGCATTCAATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTCCATTGTAATGTGGCCACAGAATGGTTAGTTTTGAGGATTGAAGCACTTCAAAATTTGATAATCATCACTTCCGCTTTGCTACTTGTTCTATTTCCTCAAGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCATTATCCTTGACATCAACACAAATATTTTGGACTCGATGGTATTGCAACTTATTAAACTATCTTATATCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCACAACCTCCTGCTATTGTGAAGGATCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGATCTTCAAGCCTTAGAAATTAGATACCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTCAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAACGGTGAGATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTCTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTATTCAGATCATGAGATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCANCCATCTTCCAAATCTCTTAGACTCTCAGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTTGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCCACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTTGCTCATAGGGTTCCAACTGTAATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCGAAACTAATGGATACCAACTCTTCATTCTCTAAACTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTAA 4386 0.3951 MTMMEIFNGYAHDFSKICLKNFEFTSFCSQRSIIDTINLIFICVFYASTIVSLIRRNFINGSHTKSRFFLFVSICCAITSVVFYSIALWSLIAKTGNSMANHLSWLACIVRGFVWTSLAVSLHVQGHKWIKILNSVWWACSFALASAFHIEILFRKHAIEIFDVLLWLLHTLLLFCAFQNLGYFVNQNELKSLSEPLLSRDVDTEETGLGRASFLSKLTFSWVNSLLSLGYSKPLSLEDIPSLLSEDKAALSHQNFMHAWQSLVKETSKNNTKNLVFWSIVRTHLKENILISVYALVRTIAVTVSPLILYAFVNFSNSRNSGKRNLREGLTIVGFLILSKVVDSVSQRHWFFCSRRSGLKMRSALMVSVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLQVLLCIGILYGVLGVGALLVLIPLLICGLINVPFVKTMQKCTTQFMISQDERLRATSEILNSMKIIKLQSWEDIFKSLVENLRAKEFIWLSKAQVLKAFGSFLFWVSPSIVSAVIFLGCVVFNSAPLNAGTIFTVLSMLRILGEPVRMIPEALSILIQVKVSFDRLNTFLFDEELDTSDGSRSYTNRSSINAVEIQAGNFIWNHESVSPTLRDVNLEIKWGQKVAICGPVGAGKSSLLYAVLGEIPKISGTVNVFGNIAYVSQSSWIQSGTVRENILFGKPMEKTRYESAIRVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTAGTAFEQLVSAHKEAIKELDQNNENKTSREESQGVYNNQSEGEISTDGQLGMQLTQEEEKQIGDVGFKTLWDYISFSRGPLMLFYIILTQFAFIALQTASTFWLAFAIEIPKITSAILIGVYALISFSGAAFIYIRCLLTSYLGLNASKAFFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPFSITFVTCVPIEILVMIGVMVLVTWPVLIVAIPAIIASKYVQEYYQASSRELMRINGTTKAPVMNFAAETSIGVVTVRAFNMVERFFKNYLKLVDTDATLFFHCNVATEWLVLRIEALQNLIIITSALLLVLFPQGYVSSGLVGLSLSYALSLTSTQIFWTRWYCNLLNYLISVERIKQFIHLPSQPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPANGEILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDHEIWKALEKCQLKETIXHLPNLLDSQVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSKLMDTNSSFSKLVAEYWASCSKNSS* 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0237 1461 CDD ABC_6TM_ABCC_D2 899 1192 IPR044726 GO:0140359
Vra9g0237 1461 Gene3D ABC transporter type 1, transmembrane domain 276 581 IPR036640 GO:0005524|GO:0016021
Vra9g0237 1461 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1166 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0237 1461 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Vra9g0237 1461 CDD ABC_6TM_ABCC_D1 290 581 IPR044746 GO:0140359
Vra9g0237 1461 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 289 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0237 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1450 IPR027417 -
Vra9g0237 1461 Gene3D - 582 858 IPR027417 -
Vra9g0237 1461 SUPERFAMILY ABC transporter transmembrane region 277 587 IPR036640 GO:0005524|GO:0016021
Vra9g0237 1461 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524
Vra9g0237 1461 Coils Coil 829 849 - -
Vra9g0237 1461 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 67 1455 - -
Vra9g0237 1461 SMART AAA_5 635 808 IPR003593 -
Vra9g0237 1461 SMART AAA_5 1243 1428 IPR003593 -
Vra9g0237 1461 Pfam ABC transporter transmembrane region 290 559 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0237 1461 Pfam ABC transporter transmembrane region 906 1164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0237 1461 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 831 IPR003439 GO:0005524
Vra9g0237 1461 Gene3D - 1200 1451 IPR027417 -
Vra9g0237 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 830 IPR027417 -
Vra9g0237 1461 MobiDBLite consensus disorder prediction 839 870 - -
Vra9g0237 1461 Gene3D ABC transporter type 1, transmembrane domain 869 1197 IPR036640 GO:0005524|GO:0016021
Vra9g0237 1461 SUPERFAMILY ABC transporter transmembrane region 890 1198 IPR036640 GO:0005524|GO:0016021
Vra9g0237 1461 MobiDBLite consensus disorder prediction 848 870 - -
Vra9g0237 1461 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Vra9g0237 1461 Pfam ABC transporter 626 760 IPR003439 GO:0005524
Vra9g0237 1461 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 67 1455 - -
Vra9g0237 1461 CDD ABCC_MRP_domain1 608 808 - -
Vra9g0237 1461 CDD ABCC_MRP_domain2 1215 1435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0237 Vra-Chr9 1724567 1730493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0237 608 852 Calmodulin-binding Proteins AT2G36910 27.969 2.09e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0237 - - gmx:100784827 2339.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0237 9 1724567 1730493 Vra9g0237 9 1724567 1730493 ECH