Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0213 ATGTTGTTGCCTATGAGTGGAGTAATAGGGATGAATTCTTCAATGGATGATATGACTTTAATTCAGCAAAGCCAGCGACATCACTTGGTTGTGAGAGAACTTGGTGAGGAGATTGATTTGGAAATTGGACCTGGGGAGGATGACCCTTCATTTGGTAATGGTGCTCTAATTGGTGCACCAATGCGGGAGTCCTCTGCTGAAGAACATGGTGAGAGCAAGCAGATGGGGATGGTTTCTCAAATTCGTAATGATTCTCAAGATATGTCCAAGAACCAACAGGTGAAAAGGAAGAAAAAGGTTGTCAAAAGATGGAGAGAAGAATGGGCAGACACCTATAAATGGGCTTATGTTGATGTGAAGGAAGGGACACCTAGGATTTTCTGCTCTGTCTGCAGGGAGTATGGCCGGAAGCATAGAAGAAATCCTTATGGGAATGAGGGCAGCCGAAACATGCAGATGAGTGCCTTGGAAGAACACAATAATAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAAATGGCCTCCAAAGATAAAATTGTGGTTGACAAGCCTGTTTATGTAAAAGTTGCCATGTCAAAAACGGCTGGATCAATTCTTGAAGCTACTCTGAAAAGGGACCCTCATGAGGTTGAATTCATTCAAGCAGTCCAGGAGGCAGTTCAAGCCCTTGAAAGAGTCATTGCAAAAAACTGTCGTTATGTTAACATCATGGAGCGCTTGTTGGAACCTGAAAGAGTGATTGTTTTTAGGGTTTCTTGGGTGGATGATAGGGGCGTCACACATGTAAATCGGGGCTTTAGGGTACAATATAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCACCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCATACAAATTGGGAGGAGCAGCTGGTGGGAGCGATTTTGATCCAAAAGGAAAAAGTGATAATGAGATCATGAGATTTTGCCAAAGTTTCATGAGTGAGATGTATCGCTACCTGGGGCCTGATAAGGACCTTCCATCCGAGGAAATGGGTGTTGGTACTCGAGAAATGGGGTATCTTTTTGGACAGTATAGACGTCTAGCTGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGAATATTTTGGTCTGGTTCCAGTCTTCGACCTGAAGCTACTGGCTACGGGCTGGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAGATGTGTTGTGAGTGGTTCTGGAAAGATAGCAATGCATGTTTTAGAAAAGCTAATTGCTTATGGTGCTCTTCCTATTTCAGTATCAGATTCCAGAGGATATTTGGTTGATGAAGATGGATTTGACTACATGAAAATATCATTTTTGAGAGACATCAAAGCTCAGCAAAGAAGCTTGCGAGACTATTCAAAAACCTATGCTCGGTCCAAATATTACGATGAAGCAAAGCCATGGAATGAAAGGTGTGATGTTGCATTTGCCTGTGCTTCACAGAACGAAATTAATCAATCTGATGCCATTAATTTGGTCAATTCAGGTTGTCGTGTACTAGTTGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTTTGAGGAAGGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCAGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCTCCGGAGGACTTTGAATCTAAATTGCAGGATGCAATGAAACAGACTTATCAGAGAGCTATCAAAGCTGCAACTGATTTTGGTTATCAAAAGGAAAGTCCCGAGGCTCTGGTGCATGGAGCAGTAATATCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTGTATAG 1917 0.4288 MLLPMSGVIGMNSSMDDMTLIQQSQRHHLVVRELGEEIDLEIGPGEDDPSFGNGALIGAPMRESSAEEHGESKQMGMVSQIRNDSQDMSKNQQVKRKKKVVKRWREEWADTYKWAYVDVKEGTPRIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVDKPVYVKVAMSKTAGSILEATLKRDPHEVEFIQAVQEAVQALERVIAKNCRYVNIMERLLEPERVIVFRVSWVDDRGVTHVNRGFRVQYNQSMGPCRGGIRFHPSMNLSVAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMSEMYRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGALPISVSDSRGYLVDEDGFDYMKISFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFACASQNEINQSDAINLVNSGCRVLVEGSNMPCTPEAVQILRKASVLIAPAMAAGAGGVVAGELELNHECSLMHWSPEDFESKLQDAMKQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGSV* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0213 638 SMART ELFV_dehydrog_3 390 636 IPR006096 GO:0006520|GO:0016491
Vra9g0213 638 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 197 382 IPR046346 -
Vra9g0213 638 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 389 636 IPR036291 -
Vra9g0213 638 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 243 370 IPR006097 GO:0006520|GO:0016491
Vra9g0213 638 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 389 636 IPR006096 GO:0006520|GO:0016491
Vra9g0213 638 Gene3D Glutamate Dehydrogenase, chain A, domain 3 197 240 - -
Vra9g0213 638 PANTHER BNAA06G02140D PROTEIN 7 638 - -
Vra9g0213 638 Gene3D Leucine Dehydrogenase, chain A, domain 1 241 376 - -
Vra9g0213 638 Gene3D Glutamate Dehydrogenase, chain A, domain 3 567 638 - -
Vra9g0213 638 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 7 638 - -
Vra9g0213 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 300 314 IPR006095 GO:0006520|GO:0016491
Vra9g0213 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 379 401 IPR006095 GO:0006520|GO:0016491
Vra9g0213 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 421 441 IPR006095 GO:0006520|GO:0016491
Vra9g0213 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 558 569 IPR006095 GO:0006520|GO:0016491
Vra9g0213 638 Gene3D - 395 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0213 Vra-Chr9 1504886 1515619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0213 236 516 EF-hand Containing Proteins AT5G07440 30.605 8.35e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0213 K00262 - gmx:100788009 1200.27