Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0208 ATGCGAAACATTGAAGTTCGTCGATTTTGCACTCTGATAACCGAAGCAACCCACAGAACCCCAGCAACGAAGCCATTCCTTCCCATACCTCACCGAACCCTTCCCGAACCTCGAGGCCAGGATCTGGACTTCATCACCGTCGCTCACAGTCACGTCGTGAACTCCCACTGGGAAAAGCTACATCCTTTGTGCTCCGTTCTCACACCCTTTCGTCTCAAACACCTCTTCCTCAACCTCCAAAACGACCACGTATTGTCCCTCAAGCTTTCCCAATGGCTTCTCCAACACCACCCATCCACGCACAACCTCGAAACCCTCTCGTTCCTCCTCCACACCCTCGCCACACATCGCCAATTCAAAACTATCCAAACCATCCTCACAAAAATCCTCTCTTCACACCCTCCTAACACCCTCTTCGACTCTCTCTTACACTCCTACCCTATCTGCAATGCTTCTCCTCTCGTCTTCGATGCCCTCTTCAAAACCCTCGCCCACGCCAGTAAATTCCGCAGCGCCACCCTCACTTATACCCTAATGAAGCAACACGGCTTCTCCCTCACCGTTGAATCCTGCAACGCCTTTTTAAGTTCTCTGCTTCGCCTCCGCAGAGCAGATATCGCGCTGTCGTTTTACCGGGAGATGCGTCGCTCTTATGTTTCGCCTAACGTCTACACTCTCAACATGGTTATTCGCGCTCATTGCATGTTGGGGGGAGTGCAGAAGGGCTTTGAGATTTTCCAGAAGATGGGGGACATGGGCTTGAGTCCTAATGTTGTGTCTTTCAATACTTTGATTTCGGGGTATTGTAACAAGGGGCTGTTTGGCTTGGCGTTAAAGGTTAAATCTTTGATGGGGGGTCATGGAGTGCAGGCTAATGTGGTTACTTTTAACACTCTGATTAATGGGTTTTGTAAGGAGAGGAAGTTGCATGAGGCGAATAGGGTTTTCAATGAGATGAAGGTTGCCAATGTGACCCCCAATGTTGTAACTTACAATACTTTGTTGCATGGGTATGGTCAGGTTGGAGACAGTGAAATGGGTGGGAAGGTTTACGAGGAGATGGTGAGGAATGGGATTAAGGCTGATATATTAACTTATAATGCATTGATTTTGGGGCTGTGTAAGGATGGGAAGACAAAGAAGGCTGCAGGGTTTGTAAAGGAGCTCGATAAAGAGAACCTGGTTCCAAATGCGAGTACTTTTTCTGCTCTTATTACTGGGCAGTGTGTGAGGAACAATTCTGAGCGTGCCTTTCTTATTTATAGGAGCATGGTGAGGAGTGGTTGTAATCCAAATGAGCATACTTTTCAGATGCTGATATCTGCTTTTTGCAAGAATGAGGACTTCGATGGGGCTGTGCAGGTTTTGAGGGACATGCTGGGTAGATTGATGAGGCCAGATTCCAGCACGTTATCTGAGCTGTATCATGGACTTCATAAGTGTGGGAAAAACCAGTTGGCATTGGCTCTGTATAGCGAGATGGAAGCGAGGCGACTCTTGCCGGATGGGTTAGACAAAGAAAAATTATTCATCGTCTATCCTGAAAATGAGACAAGTAGCTGA 1563 0.476 MRNIEVRRFCTLITEATHRTPATKPFLPIPHRTLPEPRGQDLDFITVAHSHVVNSHWEKLHPLCSVLTPFRLKHLFLNLQNDHVLSLKLSQWLLQHHPSTHNLETLSFLLHTLATHRQFKTIQTILTKILSSHPPNTLFDSLLHSYPICNASPLVFDALFKTLAHASKFRSATLTYTLMKQHGFSLTVESCNAFLSSLLRLRRADIALSFYREMRRSYVSPNVYTLNMVIRAHCMLGGVQKGFEIFQKMGDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMGGHGVQANVVTFNTLINGFCKERKLHEANRVFNEMKVANVTPNVVTYNTLLHGYGQVGDSEMGGKVYEEMVRNGIKADILTYNALILGLCKDGKTKKAAGFVKELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCNPNEHTFQMLISAFCKNEDFDGAVQVLRDMLGRLMRPDSSTLSELYHGLHKCGKNQLALALYSEMEARRLLPDGLDKEKLFIVYPENETSS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0208 520 Pfam PPR repeat family 225 270 IPR002885 -
Vra9g0208 520 Pfam PPR repeat family 292 337 IPR002885 -
Vra9g0208 520 Pfam PPR repeat family 362 409 IPR002885 -
Vra9g0208 520 PANTHER ATPASE EXPRESSION PROTEIN 3 1 518 - -
Vra9g0208 520 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 518 - -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vra9g0208 520 Gene3D Tetratricopeptide repeat domain 140 275 IPR011990 GO:0005515
Vra9g0208 520 Gene3D Tetratricopeptide repeat domain 282 411 IPR011990 GO:0005515
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 190 222 IPR002885 -
Vra9g0208 520 TIGRFAM PPR: pentatricopeptide repeat domain 434 462 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vra9g0208 520 Pfam PPR repeat 190 217 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vra9g0208 520 Pfam PPR repeat 428 459 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vra9g0208 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vra9g0208 520 Gene3D Tetratricopeptide repeat domain 412 505 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0208 Vra-Chr9 1459249 1461108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0208 28 513 Glycosyltransferase AT1G05670 28.800 2.65e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0208 - - gmx:100792776 798.119