Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0190 ATGGGGAGTTCTGAAGGGGTGGGAACATCGTCGAAGCAATACGGTATCACGAAACCCATTTCGATGGCTGGACCAACGGTTTATGATTTGCAAAGAACTCTTGAGTTAGAAAAGTTTCTCGCTGTTTCGGGACTTTATGAGAACAATGAGGAAGCTGCTAAGAGAGAGGAGGTTCTTTACCGACTTGGACAGATAGTAAAACATTGGGTGAAGCAACTCACTCGCCTAAAGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTATCATTATGACTTTTGGTTCTTATCGCCTTGGTGTTCATGGTCCTGGGGCTGACTTAGACACAATATGCATTGGACCTTCCTACGTGAATCGCGAGGAGGATTTTTTCTACACATTGCATGATATCCTAGCCAACATGGAGGAGGTTTCTGAACTGCAACCAATTCCAGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTATGCCAGTATTTCTCGCTTGATTGTACCTGAAGACTTGGTTATATCTGATATCACTCTTCTACACAATGTTGACGAGCCTACTGTGCGAAGTTTAAATGGCTGCAGAGTTGCAGATCAGATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGTACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGACGAGGCATTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTGTATCCAAATGCTGTTCCGAGTATGCTTGTTTCTCGATTCTTTAGGGTATATACACAGTGGAGGTGGCCAACTCCGGTCATGTTATGTCCAATAGAGGAAAATCAACTTGGTTTTTCTTTTTGGCATCCTCGTAAAAATCCTCGTGATCGATCCCATCTCATGCCAATTATTACTCCTGCCTATCCCTGTATGAACTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTTATGATGGAACAATTCCAATTTGGCAACAAGATCTGTGGGGATGTAGAATTGAACAAAGGTTGTTGGGAGGATCTGTTTGAACCATACAGCTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGTTGATGACTTGCGCAATTGGAAAGGTTGGGTGGGATCACGCCTTCGGCAGTTGACCTTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCCTATCATCACGAGTATATGGACACCTCAAGGCAGAGTGCACATTGTGCTTTCTTTGTGGGTTTACAGAGGAAGAAGGGAGAAGTAGTTCAAGAAGGCCAGCAATTTGATATACGAGGAACAATTGATGAATTTTTGCATGCAGTCAATATGTACATGTTCTGGAAACCAGAGATGGAGATTTTTGTTTCTCATGTTCGGAGAAGGCAAATTCCATGCTATGTGTTTCCTGATGGTTACAAAAGATTGCGATCATCAAGGCCAACCTCAACACGTGAGAATCATAAATCATTTCCTAAAAATGAGGTTTCTGGGACTGACAATGTTGAGAGAATTCGTAAGAGGAAGAACAATGATGGGTTGGGTGTGAGGGAGGATGCAACACTGAAAAAGCAATGTAGTACTCTTCCTGAAGGTAGAGGGGCAAGTAGCAGTGTGTCTGATAGTCAACAGTTGTCAAGCAGTGAGCAAGAGTTAGGTAGAACGGAGTCTCCTGAACCTGCCTCTAATTCTAGTGGGTTTGCTTCCGTTACAAGTGATAGTGGTTCTTCTGAAGATATTGGAGCCGATTCTATGGCAGGTTGTGCTGAAGATAACACCGGGGGTGTTGATATGATGAACAACAATGGCAGGTTTGAGAGTAGTACTTACGAGAACGTTTCTGGCACACTGGTGAAGAACAGATTGACAAGTTCTGAGGGAGTATTTCAACACGAGCTACAGCAAAATGCAATGTTAGGGATGGTTCTTGATTCTACAGGAAACGTTCATTCAGAGGTGGTGCAAGAACCAGTAATAAGGAGACTGGGTGTGGCATCTGCAGTGTGA 2061 0.4289 MGSSEGVGTSSKQYGITKPISMAGPTVYDLQRTLELEKFLAVSGLYENNEEAAKREEVLYRLGQIVKHWVKQLTRLKGYTDQMVEDANAIIMTFGSYRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVSELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPEDLVISDITLLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENQLGFSFWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWEDLFEPYSFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQSAHCAFFVGLQRKKGEVVQEGQQFDIRGTIDEFLHAVNMYMFWKPEMEIFVSHVRRRQIPCYVFPDGYKRLRSSRPTSTRENHKSFPKNEVSGTDNVERIRKRKNNDGLGVREDATLKKQCSTLPEGRGASSSVSDSQQLSSSEQELGRTESPEPASNSSGFASVTSDSGSSEDIGADSMAGCAEDNTGGVDMMNNNGRFESSTYENVSGTLVKNRLTSSEGVFQHELQQNAMLGMVLDSTGNVHSEVVQEPVIRRLGVASAV* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0190 686 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Vra9g0190 686 CDD NT_PAP_TUTase 54 209 - -
Vra9g0190 686 MobiDBLite consensus disorder prediction 495 618 - -
Vra9g0190 686 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Vra9g0190 686 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Vra9g0190 686 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Vra9g0190 686 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Vra9g0190 686 Gene3D - 15 357 - -
Vra9g0190 686 PANTHER POLY A POLYMERASE 3 558 - -
Vra9g0190 686 Pfam Poly(A) polymerase predicted RNA binding domain 361 422 IPR007010 GO:0003723|GO:0043631
Vra9g0190 686 PIRSF PolyA_polymerase 3 599 IPR014492 GO:0004652|GO:0005634|GO:0043631
Vra9g0190 686 MobiDBLite consensus disorder prediction 496 537 - -
Vra9g0190 686 Pfam Nucleotidyltransferase domain 88 162 IPR002934 GO:0016779
Vra9g0190 686 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vra9g0190 686 PANTHER NUCLEAR POLY(A) POLYMERASE 4 3 558 - -
Vra9g0190 686 MobiDBLite consensus disorder prediction 548 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0190 Vra-Chr9 1323552 1328444 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0190 K14376 - gmx:100783237 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0190 9 1323552 1328444 Vra9g0190 9 1323552 1328444 ECH