Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0163 ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCCCATACCCTTCTCCCCACATGGAAATCCCTTTCTGTCTCTCATCAGTCAGCAATCCCAATTTCAATATCAAGAGTTAACCAAGTCGATGCTGCACGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAGCAGTTGGTTAAAGTATTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCGGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGCGGTTCTCAATTTGGGTGGATAAACCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGATGAGCGTGCAGTAGAACCAAGAGATAAAGTTAGAACTGGTTTGGAGGGACCTGGACTCACTGTTGCACAGAAAATTTGGTATTGTGTTGCCACTGTTGGTGGTCAGTATATATGGGCTCGATTGCAGTCCTTCTCTGCTTTTCGCAGATGGGGTGATACTGAGCAGAGACCATTGGCACGACGCCTATGGATCTTGATACAACGAATAGAAGGAGTTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAATATATGAACAGGCAATTAGTTTGGAATGAATTCTCGGAAATGTTACTGTTGCTTCTTCCTCTTCTTAATTCATCATCCGTGAAAAATCTTCTTCGACCTTTCTCAAAAGATAAATCATCAAGTTCATCCGAGGATGGCACAGCATGTCCCATTTGCCTGGCCACTCCAACCATTCCTTATGTTGCTCTACCTTGTCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGGCATAGTGGTGGTGTCTCCACGGAATGA 993 0.4361 MTLPSHDAWIHTSHTLLPTWKSLSVSHQSAIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGVYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSSEDGTACPICLATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHSGGVSTE* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0163 330 SUPERFAMILY RING/U-box 268 319 - -
Vra9g0163 330 Pfam Pex2 / Pex12 amino terminal region 47 251 IPR006845 -
Vra9g0163 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 329 IPR013083 -
Vra9g0163 330 Pfam Zinc finger, C3HC4 type (RING finger) 273 313 IPR018957 GO:0046872
Vra9g0163 330 CDD RING-HC_PEX2 272 314 - -
Vra9g0163 330 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Vra9g0163 330 PANTHER - 3 328 - -
Vra9g0163 330 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Vra9g0163 330 SMART ring_2 273 313 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0163 K06664 - gmx:100805856 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0163 9 1101993 1106569 Vra9g0163 9 1101993 1106569 ECH