Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0156 ATGCGGGGAAGGCAACGGGTAGCATCCAAGGATCACATACTTGGCCAGGATAAGGATGAAAATTTAGCTTCAGTGCGTATACAGAATGCCAAACCATGTTGGTGGCACTCTTTTCGGCATGTACTAGTGGCTTCTCTTTCTTCCTTCTTGTATGGTTACCATATTGGAGTAGTGAATGAAACATTAGAGAGCATTTCTATAGATCTTGGATTTAGTGGGAATACAATAGCAGAAGGTCTTGTAGTAAGTGTATGTTTAGGAGGTGCTTTTGTTGGATCTCTGTTCAGTGGATGGATGGCAGATGGTGTTGGGCGTAAAAGAAGTTTCCAGTTGTGTGCTTTACCTATGATAATTGGGGCTGGGATGAGTGCAACAGCAAAAACTCTGTGGGGCATGCTTCTGGGAAGGTTATTTGTTGGTACTGGAATGGGACTTGGCCCACCTGTTGTAGCTCTTTATGTGGCTGAGGTCTCACCTCCAGCTGTTCGAGGTGCTTATGGAGCCTTAACCCAAATTGCAACATGTCTTGGACTCATGGGCTCTTTCTTTATTGGAATCCCATCAAAGGAAATAGTTGGTTGGTGGCGAATTTGTTTCTGGGTATCTGTTGTCCCTTCTGCAATGCTTGCCCTTTTTATGGAGATCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGATAGGAAGAACCACTGAAGCTGAAGCTGAGTTTGAGAAGCTGTTGGGAGGAGTACATGTGAAATCTGCAATGGTTGAACTATCAAAGGCTGACAAAGGTGATGCATCTGATACAGTCACACTTTCAGATTTAATTTGTGGCCGCTATTTCAGAGTGATGTTCATTGGCTGTGCGCTTTTTGCGTTGCAGCAGCTATCCGGCATAAATGCTGTTTTTTACTTCTCTTCAACTGTCTTTGAAAGTTTTGGTGTGCCATCTGATATTGCAAACGCATGTGTAGGAATCTGCAATTTAGTGGGGTCTGTTATTGCAATGATTCTGATGGATAAACTTGGAAGGAAATTGCTTCTCCTGGGTAGCTTTCTGGGCATGGCGTTAACAATGGGTCTACAAGCCATTGCTGCAAGTTCTTTTGCATCAGGATTTGGAGCAATGTATCTGTCTGTAGGTGGCATGTTACTGTTTGTGATGTCATTTGCTTTTGGCGCTGGTCCAGTTCCTTGTCTTGTCATGTCTGAAATGCTACCCGGCAATATTAGAGCAAAGGCAATGGCCATTTGCCTGGCTGTGCACTGGATGATAAACTTCTTCGTGGGTCTATTTTTCTTGCGCTTGCTGGAGCTAATTGGGGCTCAACTCCTGTATACTATTTTTGGTTCATTTTGTTTGGCAGCAGTGGTTTTTGTGAAGAAATATATTCTGGAAACAAAAGGGAAGTCGCTTCAGGAAATTGAAATTGCACTTCTTGCACAAGAGACAAGCTAA 1440 0.4347 MRGRQRVASKDHILGQDKDENLASVRIQNAKPCWWHSFRHVLVASLSSFLYGYHIGVVNETLESISIDLGFSGNTIAEGLVVSVCLGGAFVGSLFSGWMADGVGRKRSFQLCALPMIIGAGMSATAKTLWGMLLGRLFVGTGMGLGPPVVALYVAEVSPPAVRGAYGALTQIATCLGLMGSFFIGIPSKEIVGWWRICFWVSVVPSAMLALFMEICAESPHWLFKIGRTTEAEAEFEKLLGGVHVKSAMVELSKADKGDASDTVTLSDLICGRYFRVMFIGCALFALQQLSGINAVFYFSSTVFESFGVPSDIANACVGICNLVGSVIAMILMDKLGRKLLLLGSFLGMALTMGLQAIAASSFASGFGAMYLSVGGMLLFVMSFAFGAGPVPCLVMSEMLPGNIRAKAMAICLAVHWMINFFVGLFFLRLLELIGAQLLYTIFGSFCLAAVVFVKKYILETKGKSLQEIEIALLAQETS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0156 479 TIGRFAM SP: MFS transporter, sugar porter (SP) family 24 469 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra9g0156 479 PANTHER PLASTIDIC GLUCOSE TRANSPORTER 3-RELATED 5 476 - -
Vra9g0156 479 PRINTS Sugar transporter signature 48 58 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra9g0156 479 PRINTS Sugar transporter signature 133 152 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra9g0156 479 PRINTS Sugar transporter signature 288 298 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra9g0156 479 PRINTS Sugar transporter signature 374 395 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra9g0156 479 PRINTS Sugar transporter signature 397 409 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra9g0156 479 Pfam Sugar (and other) transporter 41 471 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra9g0156 479 CDD MFS_GLUT_like 43 460 - -
Vra9g0156 479 ProSitePatterns Sugar transport proteins signature 1. 329 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra9g0156 479 PANTHER - 5 476 IPR045263 -
Vra9g0156 479 SUPERFAMILY MFS general substrate transporter 27 470 IPR036259 -
Vra9g0156 479 Gene3D MFS general substrate transporter like domains 34 474 IPR036259 -
Vra9g0156 479 ProSitePatterns Sugar transport proteins signature 1. 96 113 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra9g0156 479 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 462 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0156 Vra-Chr9 1042597 1050808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0156 5 418 Organic Solute Cotransporters AT1G67300 64.218 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0156 - - gmx:100811182 825.083