Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0146 ATGGTAGATGAAGAAGTAGCGCCAAAATTCCCAGGTTTTCCTTTCGAACCCTATTCGATTCAGATTGATTTCATGAACAGCTTGTATCAATCTCTCAATCAGGGAGGCGTGTCTATGTTGGAAAGCCCAACTGGGACAGGGAAGACCATGAGTGTGATTTGCAGTGCCTTGCAATGGGTGCTTGATAAGAGGCTACAGCAGGAAGCAGTTTGTGATGAGAATCCGGGGAGTGGCGGTGGTGGTGGAGTTGGTTCAGATGACGAACCTGATTGGATGAGAGACTTTGTCGTCAACAAAGTGGAGAATAATAAGAAGGAAGAAAAGTACGGCTCTGTGTGGGGAAAACCTCATAGTAGTAAAAAGAGGACGGAAGTTCGTAAGGATTTTAGGGTTATGGGTGCTGGAGAGGAGAAGGGGGGTGACAGTGCGCAAAATAAAATCGATGCAGTGGGTGTTACTGATAAGGAGTTTTTATTGGAGGAATACGAGAGTGAAGATGAGAGAGGGCCAGGGAGTATTATGTCCAAGAGGAAGACTGTTAACACCTCCTTTAGTTCCTCTAGTGAAGATGAGTGTAGCGAAGAGGAAGAAGAGGAGAAGAAGTTGAAGGTTTATTTCTGTAGTAGAACTCATTCGCAGCTTTCGCAGTTCATAAAGGAGTTGCGGAGGACGGTCTTCGCTAAAGAGATGAAGGTTGTGAGTTTAGGCTCTAGGAAAAATCTTTGCATTAATGAAGAGGTAGTTGCACTTGGAAACTCTACACGCATAAATGAGCGATGTTTGGAACTTCAGAAGAAAAAGAAAAATGATGCTACAAAAGTTAAGAACTTAAAAGTAGGTTCAGGGATACGCAGAACAAAGGCCACCTCTGGCTGCCGAATGCTTAGAAAACACAGAGTTCAACAAGAATTTAGAAATGAGGTATTTCAACAAAGACCCTTGGATATTGAAGATCTTGCAAATCTCGGAAGAACTATGGGAACTTGTCCATATTATGGCTCTAGAAGCATGGTTCGAAGAGCTGATCTTGTTGTCCTACCATATCAATCTCTTCTGTCAAAATCATCTCGTGATGCCCTCGGCCTGAATTTGAAATCCAATATTGTTATAATAGACGAGGCTCATAATTTAGCTGATTCACTCATCAACATGTATGACTCCAAAATTACTTTATCACAGCTGGAGACTGTGCACAACCATTTGGAGCGGTACTTTCTGAGATTCCGGAGTCTTTTGGGACCTACCAATAGGAGATACATTCAAACTATCATGGTCCTCACACAAGCATTTCTCCGAGTACTTCTTGACGATAAAGATGGAAACCTTATAGGTTCTTCCCGTGATATAGATCAAGCTTCTGAAAAAAGTAGCTCCGATTTTACTGTGGCCATCAATGATTTTTTATTTGAACAAAATATAGACAATATCAACTTGGTCAAATTGTTGAAATATATTAAGGAAAGTAATATCATGCACAAGGTTAGTGGTTATGGAGAAAAGTTTGCTGCCATGGCGAAGATACCAGCACAACATAACATCGAGCAACATGCCGAGGAGGGAAGCTGTGTATCTGCTTTCCAGGCCTTAGCTAACATGTTACTATCACTGACAAACAATGATGGTGATGGAAGGATAATAATTTCCAGGTTCAGGTTAACAAGCCTCAAGAAGCAAGGAGGATATCTGAAGTACGTTATGCTCAGTGGAGAGAAGATTTTTTCTGAGATTGTAGATGAAGCACATGCCGTCATATTAGTAGGGGGAACACTTCAACCTATAGAAGAGACTAGGGAGAGACTGTTTCCATGGTTACCACCAAACCACTTGCATTTCTTTTCATGTGGGCATATTGTTCCTCCAGATAGCATTATGCCAATTGCTGTTGCACGGGGGCCTACTGGACGCACCTTTGATTTTAGCTTCGGCTCCAGGAGCTCACCGGACATGATGCGAGAACTGGGTCTTTTGCTGTGTAATCTGGTTACTGTGGTTCCGGAAGGAATTGTTGTCTTCTTCCCATCTTTTGATTATGAAAATAGAGTCTATGAGCATTGGGAATCATCTGGCATCCTTGAAAGGATTACAAAGAGGAAGCGTATCTTTAGGGAGCCAAGAAATAACATGGACGTTGAATCCGTTCTCAAGGAATATAAAGATACCATTTATACATTATCGGGTATGAATTCAGAAGTAAACCAAGTATCTTATAGTGGTGCAATACTCCTTGCTGTTGTTGGTGCGAAGTTATCCGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTATAGTCATGGTTGGACTGCCCTATGCTAGCCCATCTGATATAGAGTTGTTGGAGAGGATAAAGCACATTGATCGTTTTCAAAATCTAAAGCTTGATAATTCTAGCGTTTCTACAAGTTATGATCTATACAGTGGACATGTTGAAGGTGGTTTTGCCATCTTAAGAAGTTGCACTCGCAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGCAGAGCTATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGATATAAGATACACATCTGATTCCTCAAAACGGAGTATGGCTCACCCAGTCACCAAGCTCCCGCAGTGGATAAAAGATCGTCTTGTTTCTTCTATTAGCTATGGCGAGGTACATAGGTCCTTGCATCAGTTTTTCAAACTCAAAAAAACATGCTGCCGATAG 2727 0.4169 MVDEEVAPKFPGFPFEPYSIQIDFMNSLYQSLNQGGVSMLESPTGTGKTMSVICSALQWVLDKRLQQEAVCDENPGSGGGGGVGSDDEPDWMRDFVVNKVENNKKEEKYGSVWGKPHSSKKRTEVRKDFRVMGAGEEKGGDSAQNKIDAVGVTDKEFLLEEYESEDERGPGSIMSKRKTVNTSFSSSSEDECSEEEEEEKKLKVYFCSRTHSQLSQFIKELRRTVFAKEMKVVSLGSRKNLCINEEVVALGNSTRINERCLELQKKKKNDATKVKNLKVGSGIRRTKATSGCRMLRKHRVQQEFRNEVFQQRPLDIEDLANLGRTMGTCPYYGSRSMVRRADLVVLPYQSLLSKSSRDALGLNLKSNIVIIDEAHNLADSLINMYDSKITLSQLETVHNHLERYFLRFRSLLGPTNRRYIQTIMVLTQAFLRVLLDDKDGNLIGSSRDIDQASEKSSSDFTVAINDFLFEQNIDNINLVKLLKYIKESNIMHKVSGYGEKFAAMAKIPAQHNIEQHAEEGSCVSAFQALANMLLSLTNNDGDGRIIISRFRLTSLKKQGGYLKYVMLSGEKIFSEIVDEAHAVILVGGTLQPIEETRERLFPWLPPNHLHFFSCGHIVPPDSIMPIAVARGPTGRTFDFSFGSRSSPDMMRELGLLLCNLVTVVPEGIVVFFPSFDYENRVYEHWESSGILERITKRKRIFREPRNNMDVESVLKEYKDTIYTLSGMNSEVNQVSYSGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIDRFQNLKLDNSSVSTSYDLYSGHVEGGFAILRSCTRRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDIRYTSDSSKRSMAHPVTKLPQWIKDRLVSSISYGEVHRSLHQFFKLKKTCCR* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0146 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 390 IPR027417 -
Vra9g0146 908 TIGRFAM rad3: DNA repair helicase (rad3) 180 890 IPR013020 GO:0003678
Vra9g0146 908 SMART deadxpd 9 417 IPR006554 GO:0003678|GO:0016818
Vra9g0146 908 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 423 IPR014013 GO:0005524
Vra9g0146 908 Gene3D - 14 74 IPR027417 -
Vra9g0146 908 SMART Cxpdneu3 675 861 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vra9g0146 908 Gene3D - 178 432 IPR027417 -
Vra9g0146 908 SMART ultradead3 13 452 IPR014001 -
Vra9g0146 908 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 9 891 IPR028331 -
Vra9g0146 908 MobiDBLite consensus disorder prediction 71 90 - -
Vra9g0146 908 MobiDBLite consensus disorder prediction 162 193 - -
Vra9g0146 908 Pfam DEAD_2 206 394 IPR010614 GO:0003677|GO:0003678|GO:0005524
Vra9g0146 908 CDD SF2_C_XPD 621 859 - -
Vra9g0146 908 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 9 891 IPR045028 -
Vra9g0146 908 Pfam Helicase C-terminal domain 657 870 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vra9g0146 908 Gene3D - 635 875 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0146 Vra-Chr9 972729 978582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0146 K11273 - gmx:106794132 1469.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0146 9 972729 978582 Vra9g0146 9 972729 978582 ECH