Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0113 ATGGGATCCGGGTCGGGTTCTCTGGTGTGGTTCAGGAAGGGCATTCGGATCCACGACAACCCGGCTCTCGAGTTCGCGTCCCGAACTGCCTCTCATCTCTACCCTGTCTTCGTGATTGACCCGCATTATATGAAACCCGACCCGAATGCTTTCTCACCTGGGTCATCGCGCGCGGGTCTGAACCGCATCAAGTTCTTGTTGGAGAGCCTCGTGGACCTGGACCTCAACCTCAAGAACCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCAGCTGAAGTCGTCATTCATTGCTTGAAGGAGTGGAATGTCAGCAAGCTGTGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTCGCTGCTGGAATTGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAACCCCACGGATATTATACACAAGAACGGAGGGAAGCCACCCCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAGCCACCCTCTCCTCTCACAACCGTGTACTCTTCACTTCCTCCAGTTGGCCATCTTGGAAGTTGTGATATTTTTGAAGTTCCTACCATCACAGATCTTGGATATGGAGAAGCTGAACAGGATGAATTCTCTCCCTTCAAAGGGGGTGAGTCAGAAGCATTGAAGAGGTTGGATGAATGCATGAAAGACAAGTGGGTGGCAAACTTTGAGAAACCAAAGGGCAATCCATCTGCATTTCTGAAGCCGGCAACAACTGTTTTATCACCGTACCTGAAATTTGGTTGTTTATCTTCAAGATATTTCTACCAGCGAATTCAGGATATATATAGAAGTATGCCAAAGCATTCATCACCACCTGTTTCTCTTTCCGGACAGTTGTTGTGGCGAGAGTTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGAATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACGGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAGATGGGGTTGGATGCATCATTTGGCACGACATTCTGTCGCATGTTTTCTAACTCGAGGCGATCTGTTTGTTCACTGGGAAAAAGGACGGGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAACGGAAATTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTACAATCGTATTTATTCCCCAACCACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAAGGAGTACATTTATGAACCTTGGACTGCTCCTAAAAGTATTCAGACCAAAGCAAATTGCATAATTGGTAAAGACTACCCAATACCAGTTGTTTCTCATGATTCAGCGAGTAAAGAGTGCCGAAGGAAAATGGGGGAAGCATATGCATTGAATAAAGAATTGAATGGGTTGGTTGGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGATGAGAGTGAAAGGGAAGAGCCTGAAGGCAAAAGATATAAGCAAAAACTGATTGGCTGA 1605 0.4511 MGSGSGSLVWFRKGIRIHDNPALEFASRTASHLYPVFVIDPHYMKPDPNAFSPGSSRAGLNRIKFLLESLVDLDLNLKNLGSRLLILKGDPAEVVIHCLKEWNVSKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDIIHKNGGKPPLSYQSFVKLAGEPPSPLTTVYSSLPPVGHLGSCDIFEVPTITDLGYGEAEQDEFSPFKGGESEALKRLDECMKDKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQRIQDIYRSMPKHSSPPVSLSGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRRWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPKSIQTKANCIIGKDYPIPVVSHDSASKECRRKMGEAYALNKELNGLVGEDDLKNLRRKLDESEREEPEGKRYKQKLIG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0113 534 PANTHER CRYPTOCHROME 7 500 IPR002081 -
Vra9g0113 534 Pfam FAD binding domain of DNA photolyase 293 489 IPR005101 -
Vra9g0113 534 Gene3D - 141 182 - -
Vra9g0113 534 Gene3D - 194 308 - -
Vra9g0113 534 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 143 IPR006050 -
Vra9g0113 534 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 7 500 - -
Vra9g0113 534 MobiDBLite consensus disorder prediction 514 534 - -
Vra9g0113 534 CDD USP_Like 22 107 - -
Vra9g0113 534 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 309 533 - -
Vra9g0113 534 Gene3D HUPs 3 140 IPR014729 -
Vra9g0113 534 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 189 IPR036155 -
Vra9g0113 534 Pfam DNA photolyase 7 168 IPR006050 -
Vra9g0113 534 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 210 495 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0113 Vra-Chr9 698433 702305 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0113 K02295 - gmx:100780347 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0113 9 698433 702305 Vra9g0113 9 698433 702305 ECH