Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0086 ATGTTTGTACAGTATTCAGAGGCACAAAGAGTGTTCAATGTTGGAGATGGCACGGGCTGGACAACCCCACAAGATTCCTCCACATACCAATCTTGGGTTTCTGACAACACTTTCGCAGTCGGAGATATTCTACACTTCGATTTTCAGACAGCACAACATAACGTCGTTGAAGTGCCGGAACAATCCTACACTTCCTGCACTTCGGCTAATCCTATACGTACATATACAACCGGTCCGGTCAACGTTACCCTTAACACAGCCGGTCAACATTACTACATCTGTAGCATCGGTCAACACTGTACACGTGGACAGAGGTTAGCCGTCAATGTCTCCGGCTCTGGTTTGCCACCTTCCGCCGCCGTTTCACCGGGTGCCAACACCACTCCACCACCACCACCTTCATCTCCGGCAGCCACTTTTTCCCCTGCTTCCGTTGCCTTCTTTCTCTTCTTATCCTCATTTATTGTAGTGCTTTTTGGACATCATGCTTGA 492 0.4878 MFVQYSEAQRVFNVGDGTGWTTPQDSSTYQSWVSDNTFAVGDILHFDFQTAQHNVVEVPEQSYTSCTSANPIRTYTTGPVNVTLNTAGQHYYICSIGQHCTRGQRLAVNVSGSGLPPSAAVSPGANTTPPPPPSSPAATFSPASVAFFLFLSSFIVVLFGHHA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0086 163 ProSiteProfiles Phytocyanin domain profile. 10 112 IPR003245 GO:0009055
Vra9g0086 163 MobiDBLite consensus disorder prediction 117 136 - -
Vra9g0086 163 ProSitePatterns Type-1 copper (blue) proteins signature. 88 104 IPR028871 -
Vra9g0086 163 SUPERFAMILY Cupredoxins 11 110 IPR008972 -
Vra9g0086 163 Gene3D - 10 120 IPR008972 -
Vra9g0086 163 PANTHER UMECYANIN-LIKE 3 142 - -
Vra9g0086 163 Pfam Plastocyanin-like domain 20 104 IPR003245 GO:0009055
Vra9g0086 163 PANTHER BLUE COPPER PROTEIN 3 142 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0086 Vra-Chr9 563304 563990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0086 12 131 Miscellaneous Gene Families AT5G20230 41.667 3.75e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0086 - - pvu:PHAVU_010G155900g 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0086 9 563304 563990 Vra9g0086 9 563304 563990 ECH