Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0072 ATGCCCCCAAGATCAGGAAAAGGGAAATCCAATAAAGCAAAGGCAGATAAGAAGAAAAAAGAAGAAAAAGCAGCAGCACCTTCTCTTGTTGACATAACTGTGGTGACTCCATATGATGCAGAGATTCTTTTGAAGGGTATCTCTACTGATAAGATTCTTGATGTGAGGAAACTATTGGCTGTGAAGGTGGAGACATGCCATTACACAAACTATTGTTTATCTCATGAGGGTAAAGGTCATAAATTGAATGACAGAGTGGAAATTGTTAGCCTAAAGCCATGTGTTCTGAGAATGGTTGAAGAGGATTACACAGAGGAGGCCCAAGCAGTTGCGCACGTGCGGAGGGTCTTGGACATTGTGGCCTGCACAACAAGGTTCGGTAGGCCCAAACGGAGTTTATCAAGCCCAGAATCGAGACCCAAGAAAAACGGGAAGGCCCAACATCAGAACAAGACGAGTTTGAGCCCACCCGGGACACCGAATGGGGAATCCAGGATCGGGTCACCGTCGTCGGAGGCGCCGCCGTCGGCGATCTCCGACAATTTGGGGATGAAGGCCATTCACCCGACGCCGAAGCTCTCAGACTTCTACGAGTTCTTCTCGTTGTCTCACCTCTCTCCCCCCATTTTACAATTGAAGAGATGTGAAGTGAAGGATGAAGATGATAGGCGCAAAGGGGATTACTTTCAGCTTCAGGTTAAAATATGCAATGGGAAGGTAATAGATGTGGTTGTTTCAGAGAAAGGGTTTTACACTGTGGGGAAGCAGTCTCTGCACAGCCACACCTTGGTTGATCTTCTCCAACAGCTCAGCCGAGCCTTTGCTAATGCATATGAGTCGCTGATGAAAGCCTTTTTGGAACGTAATAAGTTTGGAAATCTTCCATATGGATTCCGAGCAAATACGTGGCTTGTCCCTCCATCTGTGGCTGAGTCTCCTTCAAGCTTTCCTGCATTGCCCGCAGAGGATGAAAACTGGGGTGGTAATGGTGGCGGCCAAGGAAGAAATGGCGAATTCGATCTTCGACCGTGGGCAACGGATTTTGCAATATTGGCCTCTCTTCCTTGCAAAACTGAGGAGGAGAGAGTACTCAGGGATAGAAAAGCATTTCTGCTTCACAATCAATTTGTTGATACCTCAATATTTAAGGCTGTTGCGGCTATACAGCAGGTCATGGAATCCAACTCAAACATGAAGAGAGAATTGAATTCTTCTCCGGGTGCTGTTCTGCATGAAGATCGCGTGGGAGACTTATCCATTGTAGTCAAACGTGATATCCAGGATGGAAATAAAAAGCATGATTCTATGCAAGTTGAACCCATCATGCAAAAGGATGATGTTCAGAAGAATTTAATCAAAGGGTTGACAGCTGATGAAAGTGTAGTTGTTCATGATACTTCTTCCTTGACTGTCGTTGTTGTACACCACTGTGGATATACTGCAACAGTAAAGGTTGTGGGTAATGTGAACATGAGGAAGCCTAAAGTACGAGACATTGAGATAGATGATCAGCCAGATGGTGGGGCAAATGCTCTCAACATCAACAGTTTGAGGATGCTGCTTCACAAGTCTGGATCTGATTCATTAGAAGGGAGTGTATCATCCCTATCAATTTTGGATGACGAAGATGCTACTAGAAGCCTTGTTCGAAAGGTTATTCAAGAAGGCATAGAGAAAATAAAGGAGGAGCCAAGTATTTCAAAAAGGTCTATTCGGTGGGAACTTGGTTCCTGTTGGATGCAGCATTTGCAAAAACAGGAAACTTCATCTGATGACAGTTCCAAAAACAAAGAAGATGGGAATGACGTTGAGCAAGCTGTTAAGGGTCTTGGAAAGCAATTTAAATTTTTGAAGAAGAGAGAGAAGAAATCAAATAACGTAGATGGTACAGATTCTCGAGAGCAAAATGACTCTAGCCCTGGAGATGTGAATGACAATGCTGATAAAGTTGAGCTGAACAGTGGTGATTTTAGTAACTCTAGTGAATTAGAGAAACTACTTTCTAACGAAGCATTTTTGCGTCTCAAAGAATCTGGAACTGATCTTCATACGAAGTCAGTGGATGAGCTTATCAACATGGCACACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGCTATGGACTTTGGATCACTTGAACTTTCTCCTGTGGATGGGCGAACACTGACCGACTTTATGCATTTAAGAGGCTTAAAGATGCGATCTTTGGGTCAAGTGGTTAAACTTGCTGAGAATCTTCCTCACATACAATCCCTTTGTATCCATGAGATGATTACTCGAGCTTTCAAGCATCAACTTAAAGCAGTTATTGCCTCTGTTGAAAATGTAGCTGATCTATCTGCAGCCATTGCATCAACACTAAATTTCTTACTTGGTGGGAGTCGAACAGAAGATAATGATCAAAGTTTGAATGATGATCATAGTCTCAGAATTCAGTGGCTACGAATGTTTTTGTCCCAAAGATTTGGGTGGACACTGAATGATGAATTTCAACATTTGAGAAAGTTGTCGATTCTCAGAGGGCTGTGTCACAAGGTTGGATTGGAATTATTCCCTAGAGATTATGACATGGAGTCTATTAAGCCCTTTGGGAAAAATGATATTATCAGCTTGGTTCCTGTTTGCAAGCATGTAGGGTGCTCCTCAATAGATGGACGCAATTTGCTGGAGGCTTCAAAAATTGCTCTTGATAAAGGAAAACTTGAGGATGCTGTAAATTATGGAACAAAGGCATTGGCTAAAATGATGGTTGTTTGTGGACCCTATCATCGAAATACTGCTAGTGCATATAGTCTCCTAGCTGTGGTTCTCTACCACACAGGAGATTTTAACCAGGCCACCATTTATCAGCAAAAGGCCTTGGATATAAATGAGAGGGAGCTTGGTCTTGACCATCCTGACACTATGAAAAGCTACGGGGATCTTTCTGTTTTCTATTATCGTTTACAACACATTGAGCTGGCTCTGAAGTATGTTAATCGCGCTCTATTCCTTCTTCACTTTACATGTGGGCTGTCTCATCCAAACACAGCTGCAACATATATAAATGTGGCTATGATGGAAGAGGGCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGACTGCCGCTAGCTACCATGCCATAGCTATAGCTCTTTCATTGATGGATGCATTCTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGACCTTCGTACACAGGACGCTGCGGCTTGGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGCGTGTCAGATCTCCTGGATTTTATCAGTCCTGATCCGAAAAGAAATGATGCACAGAGAAAACAAAGGCGTGCAAAGCTGCTCCCAACAAGTGATAACAATCAAGAACATGAAGATGCAGTAGCTGAGGAGAGCATTGTTTTTTATGACTCGAGAGATGCTCCAAGCATGGTAGAAGAGAATATAGAAGAAACCAATGACTCACGTGATTCTCAAATACCAAAAGAAAATAGTGATTTCACCAATTACAGGCCAGTGACAAGTGAAGTTGTTTATGAGGCATCATCCGATGAGGGTTGGCAAGAAGCAAATTCAAAAGGGCGATCAGGAAATGCTACTAACCGGAAGTTCGGCCACAAAAAGCGGCCTCTACTATCAAAGCTCAGCATCAATGGTTCTAATAATTACATTTACAGGGAAAGCAGTTCTAGGAATGAGATTACTTCACCACCACAAAGAGGAGTTCCTAGAGCAATGTTCGACGTGTCATCTCCGTCTAGACAACCAAAAGCTCGAAACATTGCTTTGAACGAGGATGCTGTTAATTATCCAACAAAAACTTCTGTGTCAAAAATTTCATCTCCAGCATCTCTAAGTTCCTTGGCTTCAAAGTCTATATCTTACAAAGAAGTAGCTCTGGCTCCCCCAGGTACAGTTTTAAAGCCACTGTTGGAAAAGACTGAGATGGACAAGATTAATGCTGAAGATGAGATATCCAGCAGTCTACCTGTGACATCAACCAACGAAGGTACGTTCCGAAGTTCCATAGTTAATGCAGTTTCTCAGCATGATGAAACAGAGGAAACACAAGAAATCGAACCTCAACAAGAAAATTCTGCATTGGAAGTTGAAAAGGTTTCCCTTGCTTCTTCTGATCAGGAAAAACCCACAGAAACAAATAGCAGTAAGCTTTCAGCTGCAGCCAAACCTTTCAATCCAGGAATGTTGTCCATGTCTCACCATTTAAATTCAGGTTCCTTCACTAGCATGTATGATACAGATGTTAGTCAAGGCATGAATGTGGAGCCTGTGTTTCCCCCTGCTATTGCTAGGGTCCCTTGTGGACCTAGATCACCTCTATATTACCGAACCAACTATACTTTCCGCATGAAACATGGTTTTAGTAAAAGCCAAACACCCATAGGAGAAAGAAGCGGATTTGGATCTCCAAGAATTATGAATCCTCATGCGCCTGAGTTTGTTCCAAGAAATGCTTCTCAGATAGAAGCAAATGATTCCAATTCAAATGTTTCCGATGAGCATAACTCTTTATCTGAGGGAAGCATGGCAGAAAAAAATAAGCTAGATGAAAATTTCTCTGAAATCAAGGCAAGTTCCACAAAAAACAGTATTTCTGAATCTGAGAAGTCCGAGATAGCAAGGCAGATATTGCTCAGTTTTTTAGTGAAATCTGTCAAGGAAAATATTGACTCCGTGGATGAGTCTAACGAAAGTGAAGGAAAAGTTGGCAAGTTGGAAAATTGTGATGATGAAATAGCTAATGACAGTGCTGTCATAAACATTATGTATGGAAATGAAGAAAAGAGTAAGGCAGTGCCTCATTCCAGTGATAGTGATGAGCAAGAGACATTAGGTGTTAGTGAAAAAAAGAACAATGATGAAGGGTTCATAGTTGTCTCAAAGAGGAGGAAAAACAGGCAGAAGATCACAAATGGAGTCACAGAATTGTACAACCAACAGTCCATTTGTGCATCAGTTCGTTAA 5124 0.4206 MPPRSGKGKSNKAKADKKKKEEKAAAPSLVDITVVTPYDAEILLKGISTDKILDVRKLLAVKVETCHYTNYCLSHEGKGHKLNDRVEIVSLKPCVLRMVEEDYTEEAQAVAHVRRVLDIVACTTRFGRPKRSLSSPESRPKKNGKAQHQNKTSLSPPGTPNGESRIGSPSSEAPPSAISDNLGMKAIHPTPKLSDFYEFFSLSHLSPPILQLKRCEVKDEDDRRKGDYFQLQVKICNGKVIDVVVSEKGFYTVGKQSLHSHTLVDLLQQLSRAFANAYESLMKAFLERNKFGNLPYGFRANTWLVPPSVAESPSSFPALPAEDENWGGNGGGQGRNGEFDLRPWATDFAILASLPCKTEEERVLRDRKAFLLHNQFVDTSIFKAVAAIQQVMESNSNMKRELNSSPGAVLHEDRVGDLSIVVKRDIQDGNKKHDSMQVEPIMQKDDVQKNLIKGLTADESVVVHDTSSLTVVVVHHCGYTATVKVVGNVNMRKPKVRDIEIDDQPDGGANALNINSLRMLLHKSGSDSLEGSVSSLSILDDEDATRSLVRKVIQEGIEKIKEEPSISKRSIRWELGSCWMQHLQKQETSSDDSSKNKEDGNDVEQAVKGLGKQFKFLKKREKKSNNVDGTDSREQNDSSPGDVNDNADKVELNSGDFSNSSELEKLLSNEAFLRLKESGTDLHTKSVDELINMAHKFYDEVALPKLAMDFGSLELSPVDGRTLTDFMHLRGLKMRSLGQVVKLAENLPHIQSLCIHEMITRAFKHQLKAVIASVENVADLSAAIASTLNFLLGGSRTEDNDQSLNDDHSLRIQWLRMFLSQRFGWTLNDEFQHLRKLSILRGLCHKVGLELFPRDYDMESIKPFGKNDIISLVPVCKHVGCSSIDGRNLLEASKIALDKGKLEDAVNYGTKALAKMMVVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMDAFSLSVQHEQTTLKILQAKLGSEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFISPDPKRNDAQRKQRRAKLLPTSDNNQEHEDAVAEESIVFYDSRDAPSMVEENIEETNDSRDSQIPKENSDFTNYRPVTSEVVYEASSDEGWQEANSKGRSGNATNRKFGHKKRPLLSKLSINGSNNYIYRESSSRNEITSPPQRGVPRAMFDVSSPSRQPKARNIALNEDAVNYPTKTSVSKISSPASLSSLASKSISYKEVALAPPGTVLKPLLEKTEMDKINAEDEISSSLPVTSTNEGTFRSSIVNAVSQHDETEETQEIEPQQENSALEVEKVSLASSDQEKPTETNSSKLSAAAKPFNPGMLSMSHHLNSGSFTSMYDTDVSQGMNVEPVFPPAIARVPCGPRSPLYYRTNYTFRMKHGFSKSQTPIGERSGFGSPRIMNPHAPEFVPRNASQIEANDSNSNVSDEHNSLSEGSMAEKNKLDENFSEIKASSTKNSISESEKSEIARQILLSFLVKSVKENIDSVDESNESEGKVGKLENCDDEIANDSAVINIMYGNEEKSKAVPHSSDSDEQETLGVSEKKNNDEGFIVVSKRRKNRQKITNGVTELYNQQSICASVR* 1708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1650 1669 - -
Vra9g0072 1707 SMART tpr_5 928 961 IPR019734 GO:0005515
Vra9g0072 1707 SMART tpr_5 1012 1045 IPR019734 GO:0005515
Vra9g0072 1707 SMART tpr_5 970 1003 IPR019734 GO:0005515
Vra9g0072 1707 ProSiteProfiles TPR repeat profile. 928 961 IPR019734 GO:0005515
Vra9g0072 1707 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1704 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1394 1413 - -
Vra9g0072 1707 SUPERFAMILY Hypothetical protein c14orf129, hspc210 225 291 IPR023231 -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1195 1215 - -
Vra9g0072 1707 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1231 1245 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 147 177 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1143 1172 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1542 1557 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 620 656 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1418 1441 - -
Vra9g0072 1707 SUPERFAMILY TPR-like 891 1047 IPR011990 GO:0005515
Vra9g0072 1707 Pfam Tetratricopeptide repeat 1011 1085 - -
Vra9g0072 1707 Pfam Tetratricopeptide repeat 927 997 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1418 1440 - -
Vra9g0072 1707 CDD CLU-central 717 858 IPR033646 -
Vra9g0072 1707 Pfam Translation initiation factor eIF3 subunit 135 715 857 IPR033646 -
Vra9g0072 1707 ProSiteProfiles Clueless (Clu) domain profile. 322 594 IPR025697 -
Vra9g0072 1707 Gene3D Tetratricopeptide repeat domain 887 1130 IPR011990 GO:0005515
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1228 1253 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 128 184 - -
Vra9g0072 1707 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1704 IPR027523 GO:0006996
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1 24 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1647 1669 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1139 1172 - -
Vra9g0072 1707 MobiDBLite consensus disorder prediction 1542 1561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0072 Vra-Chr9 469856 481151 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0072 K03255 - gmx:100801625 2790.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0072 9 469856 481151 Vra9g0072 9 469856 481151 ECH