Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0069 ATGTCTCTCAGAAGCAGCGGTTTCTTTTGGTTTCAAATAAATTGCTCCGATTCGAAGCAAGGTGGTCGTGGTTTTGGAGAAAACTCCAACAGGATTAAGACCAACAAATCTGACAAGGGTTTCGTGTCGCAGCAAAGTGTCAAGGGACCAGCACCTAAACAGTCTCGCTCTCTGTCTTCTCAGGCACCCCGTTTAAGTTCACAACTTGACGGCAAATCTAGGAACGATTTTTTGGATGTCGACTTTGAGGAACGCCTAAAAACAGTTAGAAGGTCAGCACTTGAGCAGAAGAAGGCAGAGGAGCAAAAGGAGTTTGGAGCAATTGACTATGATGCACCAGTTTCTTCCGACGAAAAGACAATTAGCCTTCCTACTAAGATTGGAGTGGGGGTAGCTGTTGTAGTCTTCGGTCTGGTTTTTGCTTTTGGAGATTTTCTTCCATCGGGAAGTGTTAGTCCTACGGATGAAAGTGCTGTTGTCAATAGTAAGTTGTCCGAGGAAGAGAAAGCTACTCTCCAGAGTAGGCTCAAGGAATTTGAAGCAACATTAAGTATTTCCCCGAGAGATCCAACTGCTCTTGAAGGAGCTGCAGTAACTTTGGCTGAATTAGGGGAATATGCAAGAGCTGCTTCTCTACTTGATGATTTGACGAAGGTAAAACCAAGTGATGCTGATGTTTTTCGTTTGCTTGGAGAAGTTAAATACGGACTCAAGGATTATGAAGGGAGTGTTGCTGCATATAAAAGTTCGGCAAAGGTGTCCAAAGATATCCAACTTGAAGTTCTCCGTGGCCTTACCAATTCATTACTCGCTGCCAAAAAGCCGGAGGAGGCTGTTCAATTACTTTTGACTTATCGTAAGGATTTGAGTTCCGAAAACTTAAGTAAAAGTTCTAATAGCAACCCATCAGACTCACAGAAGCTGGACCCTGTTCAAGTTGAATTACTTCTAGGGAAAGCCTACTCAGATTGGGGCCATGTCAGTGATGCTGTAGCTGTTTATGATCAACTCATATCCACTTACCCTAATGATTTTCGTGGATACTTAGCTAAGGGAATCATCTTAAAAGAAAACAAAAATATTGGTGATGCTGAAAGAATGTTCATACAAGCTAGGTTCTTTGCACCAGATAAAGCCAAAGCACTTGTGGACCGTTATTCAAGATGA 1167 0.4259 MSLRSSGFFWFQINCSDSKQGGRGFGENSNRIKTNKSDKGFVSQQSVKGPAPKQSRSLSSQAPRLSSQLDGKSRNDFLDVDFEERLKTVRRSALEQKKAEEQKEFGAIDYDAPVSSDEKTISLPTKIGVGVAVVVFGLVFAFGDFLPSGSVSPTDESAVVNSKLSEEEKATLQSRLKEFEATLSISPRDPTALEGAAVTLAELGEYARAASLLDDLTKVKPSDADVFRLLGEVKYGLKDYEGSVAAYKSSAKVSKDIQLEVLRGLTNSLLAAKKPEEAVQLLLTYRKDLSSENLSKSSNSNPSDSQKLDPVQVELLLGKAYSDWGHVSDAVAVYDQLISTYPNDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDKAKALVDRYSR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0069 388 SMART tpr_5 190 223 IPR019734 GO:0005515
Vra9g0069 388 SMART tpr_5 224 257 IPR019734 GO:0005515
Vra9g0069 388 SMART tpr_5 311 344 IPR019734 GO:0005515
Vra9g0069 388 SMART tpr_5 345 378 IPR019734 GO:0005515
Vra9g0069 388 Coils Coil 162 182 - -
Vra9g0069 388 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 6 388 - -
Vra9g0069 388 Gene3D Tetratricopeptide repeat domain 152 386 IPR011990 GO:0005515
Vra9g0069 388 SUPERFAMILY TPR-like 176 381 IPR011990 GO:0005515
Vra9g0069 388 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Vra9g0069 388 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 6 388 - -
Vra9g0069 388 MobiDBLite consensus disorder prediction 20 72 - -
Vra9g0069 388 Pfam Tetratricopeptide repeat 198 250 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0069 - - pvu:PHAVU_010G164800g 647.891