Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0062 ATGGCTCTTGCGGGAGTTGAAGTGAAGCATGTGGAAGGTGTGCCGGAGGAGAATTGCTCCGCCAAGCCCACCAAGCAGGGCGAGGGTCTCCGCCACTACTATTCTCTCAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGCGTAACGAGCTCAATTCCAGAGTGAGGATGCTACGCGAAGAGTTGCAGCTTCTTCAGGAGCCCGGCTCCTATGTCGGTGAAGTTGTCAAAGTGATGGGCAAGAACAAAGTCCTTGTCAAGGTCCACCCAGAAGGAAAATATGTTGTCGACATTGACAAAAATATTGACATTACAAAGATCACTCCATCCACTAGAGTTGCACTTCGCAATGATAGCTATGTTCTTCATTTAGTTCTGCCGAGTAAAGTTGATCCCTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACGTATGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATCAAAGAGGTTATCGAGCTACCAATTAAGCATCCTGAGCTCTTTGAGAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTGTATGGGCCACCTGGTACAGGAAAAACGTTGTTGGCTAGGGCAGTGGCGCATCATACTGACTGTACGTTCATAAGGGTTTCTGGTTCTGAATTGGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCCAGGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGCATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAACGTACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCAACAAATAGGATTGATATCTTGGATCAAGCTCTCCTTAGACCTGGACGGATTGATAGGAAGATTGAATTTCCTAACCCTAATGAAGAGTCTCGGCTGGATATTTTGAAAATCCATTCAAGGAGAATGAATTTAATGCGTGGCATTGATTTAAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGGCTGTATGCACTGAAGCCGGTATGTTTGCTTTGAGGGAGAGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGGAGACTGAAAAAAATATGTCATTGCGGAAGTTGTGGAAGTGA 1254 0.449 MALAGVEVKHVEGVPEENCSAKPTKQGEGLRHYYSLNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0062 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Vra9g0062 417 Gene3D - 149 330 IPR027417 -
Vra9g0062 417 Gene3D - 335 412 - -
Vra9g0062 417 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 23 414 - -
Vra9g0062 417 Pfam ATPase family associated with various cellular activities (AAA) 196 329 IPR003959 GO:0005524|GO:0016887
Vra9g0062 417 Coils Coil 38 72 - -
Vra9g0062 417 Gene3D - 40 148 IPR012340 -
Vra9g0062 417 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 42 402 IPR005937 GO:0005737|GO:0030163|GO:0036402
Vra9g0062 417 SMART AAA_5 192 332 IPR003593 -
Vra9g0062 417 Pfam Proteasomal ATPase OB C-terminal domain 83 138 IPR032501 -
Vra9g0062 417 PANTHER BNAA02G04630D PROTEIN 23 414 IPR035261 GO:0036402
Vra9g0062 417 CDD AAA 162 329 - -
Vra9g0062 417 Pfam AAA+ lid domain 353 395 IPR041569 -
Vra9g0062 417 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0062 Vra-Chr9 397540 401239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0062 157 413 Miscellaneous Gene Families AT5G58870 40.541 1.38e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0062 K03066 - gmx:100812783 791.186