Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0014 ATGGCCCTTCTTCTCCGTCTCAATCGTCGGAGGGCAACCAGCTCTCGCACNCTCTTCTTCTCGACTTCGAATTCCGATTCTAACTCCGGCTCCAACTCTCCCTTCTCTTCCCTTTTNAGAGAGGTAAGGGAAAATCTCAAACAACCCNCATCCCCTTCCTCAAACCCTCGCTCACAACCACTCTTCGCAAACGAGATCCGAAAAAACCTCAGCGAGTTCCGCGCCAAGACCGCTCCTCCTCCGCCCGGCCACCCGTCGCAGCAGCAGCAGCAGCAATTTTCGTTCCAGCAAATCTACCAGCGCCAGAACGCGCAGGGGAATCCCCCCAGATCGGGAGAACCGCCCTCCCTCAGAATGGATACCATTCGCGAGAGCCTGCGGAACTTTTCTGGTGCCCAAAACTCGCCGTGGCAGGGCCGTCCTGGGATGATCGGCGGCACGAACGCCTTGCCGCAGGACATTTTCGGGAAAGAGATGAGGAAAGAGGGTACGCAGTCGAAGACGATGTTTTCGGCGGGGTTCTTGAAGACTTACAGCGTGGAGGATTTGGGGAAGAAATTGAGAAAGCTGAGGCCGGAGGGAAAGGAAAAGGGTTGGTTTTCAGTGAGGGAGTTGAATGAGAGGTTGGTGAGGTTGAGGAAGATGGAGGAGGAGCAAGCCCGTTCCAATATCCATGATTCTACTATTGGCGCAATAAGGGAATGTCTCGTTGAGATTAATCAAGAGCAAAATAATGCCGCGAAGAAAGCTTCAGCACAGGGACTTAGCATATTGAACCATTTGAGTGGGACTCCAACCTTCTCTCTGGAACCTCCTAAACCCCATCTTGTTGAAAAGTACTTTCATCCGGATAACATGTCCTCCGCTGAGAAGATGAAAGTTGAGCTTGCGAAGGTTAGGGATGAGTTTAAAATGTCGGAGTCGGACTGCGGTTCTGCGCGTGTTCAAATTGCCCAACTCACAACTAAGATCAAGCATCTATCCGCAGTCCTACACAAGAAGGATGTTCATTCTCGTAAAGGATTGATAGCAATGGTTCAGAGGAGAAAAAGATTACTGAAATACCTCAGAAGAACTGATTGGGATTCCTATTGCTTTGTTATCTCTAAGCTGGGTCTTCGTGATAATCCTGAGCATAGCTATAGATCTCGAACTAGTATGGCAACTTAA 1170 0.4991 MALLLRLNRRRATSSRTLFFSTSNSDSNSGSNSPFSSLXREVRENLKQPXSPSSNPRSQPLFANEIRKNLSEFRAKTAPPPPGHPSQQQQQQFSFQQIYQRQNAQGNPPRSGEPPSLRMDTIRESLRNFSGAQNSPWQGRPGMIGGTNALPQDIFGKEMRKEGTQSKTMFSAGFLKTYSVEDLGKKLRKLRPEGKEKGWFSVRELNERLVRLRKMEEEQARSNIHDSTIGAIRECLVEINQEQNNAAKKASAQGLSILNHLSGTPTFSLEPPKPHLVEKYFHPDNMSSAEKMKVELAKVRDEFKMSESDCGSARVQIAQLTTKIKHLSAVLHKKDVHSRKGLIAMVQRRKRLLKYLRRTDWDSYCFVISKLGLRDNPEHSYRSRTSMAT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0014 389 Coils Coil 202 222 - -
Vra9g0014 389 MobiDBLite consensus disorder prediction 47 65 - -
Vra9g0014 389 MobiDBLite consensus disorder prediction 87 110 - -
Vra9g0014 389 MobiDBLite consensus disorder prediction 126 141 - -
Vra9g0014 389 MobiDBLite consensus disorder prediction 20 150 - -
Vra9g0014 389 SMART Ribosomal_S15_2 296 374 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vra9g0014 389 Gene3D - 341 376 - -
Vra9g0014 389 MobiDBLite consensus disorder prediction 20 39 - -
Vra9g0014 389 SUPERFAMILY S15/NS1 RNA-binding domain 295 375 IPR009068 -
Vra9g0014 389 Hamap 30S ribosomal protein S15 [rpsO]. 286 375 IPR005290 GO:0003735|GO:0005840|GO:0006412
Vra9g0014 389 TIGRFAM S15_bact: ribosomal protein uS15 297 374 IPR005290 GO:0003735|GO:0005840|GO:0006412
Vra9g0014 389 Gene3D - 289 339 - -
Vra9g0014 389 PANTHER S15/NS1, RNA-BINDING PROTEIN 1 386 - -
Vra9g0014 389 CDD Ribosomal_S15p_S13e 298 372 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vra9g0014 389 Pfam Ribosomal protein S15 298 374 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0014 Vra-Chr9 126764 133451 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0014 - - ccaj:109818150 405.216