Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0005 ATGGATTCCAATAATTGGAGACCTAATCAAGGTAATAACCCCTCTATGGATCCAAACGACTGGAGAGCTCAACTACCACCGGAATCACGTCAAAGAATTATCAACAAAATAATTGACACATTAAAAAAACACCTTCCTTTTTCTGGTCATGACGGAATGCAAGATCTTCATAATATTGCTAAAAGGTTTGAAGAAAAGATTTTTACTGCTGCAACAACCCAGCCTGATTATTTACGGAAAATATCTATGAAGATGCTTACAATGGAGAGTAAGTCCCAAAACACCCTGGCTAACACTCAAGTTGGCCCTAGCAATAAACCTACCGATCAAGGACTTGTTTTGCAGCCTCAAGTTCATAATCTTGGGCAACAACATTCTGTTCCTTTGTCTAGTCAGATGCAGTCACATCAGCAGCTTCTATCTCAAAATGTTCAAAATAATGTTGCATCTCAACCTAACCTTCCACCTGTATCTAGTCTAGGCCAGACTCCCAACCAAAATATTGTCAAGAACTCTAACATACAGAATATACCTGGGCCAAATTCAGTTGGAAGCAGTATTAGCCAAAATTCCAACTTACAGAGTATGTTTCCTGGTTCTCAGAGAACAATGCCAGGAAGGCAGCAGGTTGGTCCCCCACAACAGCAGCTGCAATCACAGAGTCCACAGCAATATCTTTACCAGCAGCAGTATCTGAAGCAGAAGCTCCAGCAGCAATCTCAGATGCAGCAGCAACAACAGCAAAGCCTTATGCAACCAAATCAGTTGCAATCTTCTCAGCAATCTACTAGTATTCAACAATCAATGCAGTCCATGCCTCAGCAACATTCACAAGTTATGAGGCATCAACAACAACAGACTTCTATGGTACATCAGCAACAAACACCGGTCACTCAACAGACAATCTTACCTGCACAACAACAACAACAACTTATGGGACCTCAGTCGAATGCAGCAAACATGCAACATTCACAGATGCTCGGGCAACAGAACAATGTTGGTGATATACAGCAACCTCAGAGGATGCTTTCACAGCAAAGTAATCTTACAAGCCTGCAACAACAGCGACAACAACAATTAATAAATCAGCAAAACAATCCAGCAAATGTACATCAACAACAATTGGGAAATAATGGCCCTGGGTTACAGCAGCAGCATTTGCTTGGACCTGACTCTGGCAATGCAGACATGCACACAAGTCATCACTCTACACACATGTTGCAACAACCAAAGGTTCCAATGCAGCAACAATCACAACAAAATTCGTTAAATTTGTTGCTACCTCATTCACAGCAGTCACAGCCACTGGGTTCACAACAGCAATTAATGCCACAGATTCACACTCAGTCTACACAGTTGCAACAGCAATTGGGCTTGCAGCAGCAGCAGCAGCCAAATCCCTCACAACGTGATATGCAGCAAAGAATGCAAACATCAGGATCCTTACTTCAACAAAATGTTCTTGATCAACAAAAACAGTTGTATCAATCTCAAAGAAATCTTTCAGAAACATCAGCAACTTCTCTGGATTCTACAACACAGTCTGCACAACCTGGTGGAAATGATTTGCAAGAAGAAATTTACCAGAAGATCCAAGCCATGAAAGAAAGTTATTTGCCAGATATGAATGAAGTGTACCAAAAAGTTGCTAATAAACTTCAGCAGCATGATTCTCATCCCCAACAGTCGCAAACGGATCAGATTGATAAGCTGAGGGCGTATAAAATGTTGTTGGAACGTATGATGACATTCGTACAGATTCCCAAGAGCAGCATTGTGCCTCAATACAAGGAAAAATTGGTACCATATGAGAAGCAGATTATAAATCTCATAAATCAAAGTAGACCCAGGAAAAGCATGTCTTCTGTGCAGGTAGGACAGATTCCCCAAACCCATATGTCCTCCATGCAACAGCCCCAATCCCAGGTTTCACAATTACAGTCTCACGAAAATCAAATGAACTCTCAGCTGAAGTCAACAAATTTACAAGGTTCTATGCCAACCATGCAGCAGAATAATATTGCAACCTCTCAGCACAATCCTTTGTCTGGTGTATCAGCAGGACAGCAGAATATGATGAATTCGATGCAACCTGGAGCTAACTTAGATTCTGGACAAGGAAACTCTGTGAACTCCCTTCAACATGTTCCAATGAACTCCATCCAGCAAACTCCTGTTAGTACTCCTCAACTACAGACAAGTATTAATTCCTTACAATCACAAGGTGGGGCAAATGTTAGTCAACCAAATTCCCTTCAATCAGGTTCCAGTGCACTTCAACACCAACTGAAACATCAGGAACAGCAGATGCTGCAGAATCAGCAATTCAAACAATTTCAGCATCGACAAATGGTGCAGAGGCAGCTCTTTCAGCAGCAGCAACTACACCATCCAACGAAGCCACAGCTATCTGCACAATTGCAAACACATCAAATGTCCCAGCTTCACCAAATGAATGATATAAATGACTTAAAAATGCGACAAGGAATTGGTGTTAAGCCAGGAGTCTTTCAACATCTTACATCAGGTCAACACTCAGCATATTCCCATCAACAGCTGAAACAAGGGAATGCATTTCCTGTTTCTTCACCCCAACACCTTCAGGCTCCATCTCCTCAGATTCAGCAACATTCATCTCCCCAGGTTGAGCAACAAAATCATCTCCCGTCTAAATCTAAAGTTGCAACTCCTCTGCAATCTTCTAATTCACCCTTTGTAGGACCTACCCCTTCACCTCCTTTGGCTCCATCTCCTATGCCAGGGGAATCTGAGAAGTCCGTTCCCTGTGTTTCATCAATATCAAATGCTGCAAATATTGGACATCAACAAACAGGGGTTGCAGTAGCACCACCTCAATCCCTTGCCATTGGGACTCCTGGGATTTCAGCGTCTCCTTTATTGGCAGAATTCAGTGGTCAGGATGGTGCGCATGGCAATGCTTTAGCTGCCACTTCTGGGAAGTCAACTGTGACAGAGCAGCCTCTTGAACGCCTAATTAATGTGGTAAAATCAATTTCATCTAAAGCATTAAGTGCTGCGGTCAGTGATATTGGCTCAGTTGTCAGCATGAATGATAGAATAGCAGGATCAGCTCCAGGTAACGGATCCAGAGCAGCTGTTGGTGAGGATTTGGTTTCCATGACTAATTGTCGCCTTCAGGCTCGAAATTTCATTACCCAAGATGGTACCAATGGAATTAAGAGGATGAAACGTTACACAAGTGCTATACCCTTGAGTGGTGTATTATCTGCTGGTAGCATGGATGGTAGCATCAAGCAGTTAACTGCTTCAGAGGCTTCTGATCTAGAGTCAACAGCAACATCCAGTGTCAAGAAACGGAAAATCGAGGTTAACCATGCCCTTTTGGGAGAAATAAGGGATATTAATCACCAACTTATCGACACAGTAGTAGACATAAGCAATGTTGATCCAACACCTGCTGTTGCAGCTGCTGAAGGAGCAGAAGGAATTCTTGTCAAATGCTCTTTCATTGCTGTGGCTCTCAGCCCTAGCTTAAAATCCCAATATGCTTCAGCGCAGATGTCACCTATTCAGCCTCTGCGTTTACTGGTTCCTGCAAATTATCCTAACTGTTCTCCCATACTCCTAGACAAATTTCCAGTTGAATCCAGTAAAGAGAACGAAGATCTTTCAGCCAAGGCAAAGGCAAAGTTCAGCATATCTTTGCGCAGTTTACCACAACCTATGTCACTTGGGGATATAGCAAGGACTTGGGATGTTTGTGCTCGAAGTGTTATTTCTGAGCATGCCCAACAGAGTGGGGGAGGAAGCTTCAGCTCTAAGTATGGAACTTGGGAGAATTGTTTGACCACTAACTAA 3840 0.4271 MDSNNWRPNQGNNPSMDPNDWRAQLPPESRQRIINKIIDTLKKHLPFSGHDGMQDLHNIAKRFEEKIFTAATTQPDYLRKISMKMLTMESKSQNTLANTQVGPSNKPTDQGLVLQPQVHNLGQQHSVPLSSQMQSHQQLLSQNVQNNVASQPNLPPVSSLGQTPNQNIVKNSNIQNIPGPNSVGSSISQNSNLQSMFPGSQRTMPGRQQVGPPQQQLQSQSPQQYLYQQQYLKQKLQQQSQMQQQQQQSLMQPNQLQSSQQSTSIQQSMQSMPQQHSQVMRHQQQQTSMVHQQQTPVTQQTILPAQQQQQLMGPQSNAANMQHSQMLGQQNNVGDIQQPQRMLSQQSNLTSLQQQRQQQLINQQNNPANVHQQQLGNNGPGLQQQHLLGPDSGNADMHTSHHSTHMLQQPKVPMQQQSQQNSLNLLLPHSQQSQPLGSQQQLMPQIHTQSTQLQQQLGLQQQQQPNPSQRDMQQRMQTSGSLLQQNVLDQQKQLYQSQRNLSETSATSLDSTTQSAQPGGNDLQEEIYQKIQAMKESYLPDMNEVYQKVANKLQQHDSHPQQSQTDQIDKLRAYKMLLERMMTFVQIPKSSIVPQYKEKLVPYEKQIINLINQSRPRKSMSSVQVGQIPQTHMSSMQQPQSQVSQLQSHENQMNSQLKSTNLQGSMPTMQQNNIATSQHNPLSGVSAGQQNMMNSMQPGANLDSGQGNSVNSLQHVPMNSIQQTPVSTPQLQTSINSLQSQGGANVSQPNSLQSGSSALQHQLKHQEQQMLQNQQFKQFQHRQMVQRQLFQQQQLHHPTKPQLSAQLQTHQMSQLHQMNDINDLKMRQGIGVKPGVFQHLTSGQHSAYSHQQLKQGNAFPVSSPQHLQAPSPQIQQHSSPQVEQQNHLPSKSKVATPLQSSNSPFVGPTPSPPLAPSPMPGESEKSVPCVSSISNAANIGHQQTGVAVAPPQSLAIGTPGISASPLLAEFSGQDGAHGNALAATSGKSTVTEQPLERLINVVKSISSKALSAAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGTNGIKRMKRYTSAIPLSGVLSAGSMDGSIKQLTASEASDLESTATSSVKKRKIEVNHALLGEIRDINHQLIDTVVDISNVDPTPAVAAAEGAEGILVKCSFIAVALSPSLKSQYASAQMSPIQPLRLLVPANYPNCSPILLDKFPVESSKENEDLSAKAKAKFSISLRSLPQPMSLGDIARTWDVCARSVISEHAQQSGGGSFSSKYGTWENCLTTN* 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0005 1279 MobiDBLite consensus disorder prediction 339 420 - -
Vra9g0005 1279 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 1 262 - -
Vra9g0005 1279 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 260 1278 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 432 479 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 497 522 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 858 905 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 737 773 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 858 927 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 244 286 - -
Vra9g0005 1279 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 260 1278 IPR044661 GO:0003713|GO:0031490
Vra9g0005 1279 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 1 262 IPR044661 GO:0003713|GO:0031490
Vra9g0005 1279 Pfam KIX domain 19 98 IPR036546 -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 1 24 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 1 19 - -
Vra9g0005 1279 MobiDBLite consensus disorder prediction 793 813 - -
Vra9g0005 1279 SUPERFAMILY Kix domain of CBP (creb binding protein) 19 92 IPR036529 GO:0003712|GO:0006355
Vra9g0005 1279 MobiDBLite consensus disorder prediction 148 222 - -
Vra9g0005 1279 Gene3D Coactivator CBP, KIX domain 20 99 IPR036529 GO:0003712|GO:0006355
Vra9g0005 1279 MobiDBLite consensus disorder prediction 676 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0005 Vra-Chr9 40175 57094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0005 K14972 - gmx:100805336 1424.84