Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0002 ATGGGGGGAGCATGTTCTAGGAAGCGAGAGCAGGACAATGAAGATAGTATTAACAGAGGATTATCACGAAGCTATTCTAAATGTGGGAGTTTGAAATGGTGGACATCGTCTTTTTCTTATCCATCTGTTGATTTTCACTTACGAAAAGGAGAATGTCCACCACTTTTGGACCTGTGCATACAGAAAATAAATGAGGACATTGATAAATATAACTCATTTTCTATGCTGCCACGGGATATTAGTCAGTTAATTTTTAATAATTTGGTTTACTCGAGATGTCTAACCAGTGCTTCCTTAGAAGCTTTTCGAGATTGTGCTCTACAGGATCTTTACTTAGGAGAATATGGTGGTGTTAATGATGATTGGATGGACGTCATCTCATCCCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACATACCTTAAAGATTGTGCAAGTTTAATTTCTTTGAATCTAAATTACTGTGATCAAATTTCAGATCGTGGACTAGAGTGTATCAGTGGCCTGTCAAACTTGACAAGTTTGAGTTTTAGACGAAATGATTCAATTTCTGCTAAGGGAATGAGTGCCTTTTCTGGTCTTGTCAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCATCTTCGAGGTTTGACCAAGTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATAACAGATTATGATATGAAACCTCTTTCAGAGCTTGCCAGCCTGAAAAGTCTAGAGATTTCATCCAGTAAAGTCACTGATTTTGGTGTCAGTTTCCTGAGAGGGTTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTGCGCTATCAAACTTGAATCTTAATAGATGCAATATCTCTGACAATGGATGCAAAAAATTCTCACGACTGGAAAATTTGAAAGTATTAAACTTGGGATTTAATGTCATAACAGATACTTGTTTAATTCACTTGAAAGGATTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTCAATTTGGCTGGCCATAAGCGATTGAACTGCTTGGAATTGTCTGATACAGAAGTTGGTAGCAATGGACTACAGCATTTATCAGGACTGTCTAATCTGCAGAAAATAAATCTTTCTTTTACCATGGTTAGTGACGGTGGTTTAAGCAAATTNTGTGGACTCTCATCTCTGAAGTCCCTTAATTTGGATGCTTACCAAATTTCTGACATTGGGCTGTCAAACCTCACAAGTTTGACTGGCCTCACTGACCTGGATTTGTTTGGTGCACGAATCACAGATTTTGGTACAAACTATTTGAAAAAGTTTAAGAACCTGAGGTCTTTGGAAATATGTGGTGGAGCTTTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTCTCTTCTCTGGTCTGCTTAAATTTATCACAGAACAGCAATCTTACAGACAAAACTCTTGAGTTAATTTCAGGGCTCACTGGGTTGGTTTCTTTGAATGTTTCAAATTCTCGTATCACCAATGCTGGTCTGCAGCATTTGAAAGCACTCAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATGAAGAAACTGAAATCAATATACCTCCCGAATCTGGTAAGCTTTCGGCCAGGTTAG 1734 0.391 MGGACSRKREQDNEDSINRGLSRSYSKCGSLKWWTSSFSYPSVDFHLRKGECPPLLDLCIQKINEDIDKYNSFSMLPRDISQLIFNNLVYSRCLTSASLEAFRDCALQDLYLGEYGGVNDDWMDVISSQGSSLLSVDLSGSDVTDFGLTYLKDCASLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSISAKGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGVSFLRGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNISDNGCKKFSRLENLKVLNLGFNVITDTCLIHLKGLTKLESLNLDSCKIGDEGLVNLAGHKRLNCLELSDTEVGSNGLQHLSGLSNLQKINLSFTMVSDGGLSKXCGLSSLKSLNLDAYQISDIGLSNLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGALTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKALKNLRSLTLESCKVTANDMKKLKSIYLPNLVSFRPG* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0002 577 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Vra9g0002 577 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
Vra9g0002 577 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Vra9g0002 577 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 2 534 - -
Vra9g0002 577 SUPERFAMILY RNI-like 272 566 - -
Vra9g0002 577 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Vra9g0002 577 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Vra9g0002 577 PANTHER UNCHARACTERIZED 2 534 - -
Vra9g0002 577 SUPERFAMILY L domain-like 130 342 - -
Vra9g0002 577 Gene3D Ribonuclease Inhibitor 221 337 IPR032675 -
Vra9g0002 577 SMART LRR_CC_2 421 445 IPR006553 -
Vra9g0002 577 SMART LRR_CC_2 542 566 IPR006553 -
Vra9g0002 577 SMART LRR_CC_2 228 253 IPR006553 -
Vra9g0002 577 SMART LRR_CC_2 154 179 IPR006553 -
Vra9g0002 577 SMART LRR_CC_2 301 325 IPR006553 -
Vra9g0002 577 SMART LRR_CC_2 349 373 IPR006553 -
Vra9g0002 577 SMART LRR_CC_2 493 518 IPR006553 -
Vra9g0002 577 Gene3D Ribonuclease Inhibitor 127 220 IPR032675 -
Vra9g0002 577 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Vra9g0002 577 Gene3D Ribonuclease Inhibitor 407 479 IPR032675 -
Vra9g0002 577 Gene3D Ribonuclease Inhibitor 338 406 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0002 Vra-Chr9 4099 15707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0002 153 411 Receptor kinase-like Gene Family AT1G75820 25.670 4.26e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0002 - - gmx:100795219 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0002 9 4099 15707 Vra9g0002 9 4099 15707 ECH