Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2650 ATGAACAAGAGGCCTATAACCGCCGTCTACAAGGCCATTCCCGATCTCTGTCATCGAGAACTCGGCCATCTACCTCCCAGAAATTTCGCTCTTCGACTTGGCGCCTCTGAGGATCTTGTTCTTCGACTTGATGTGCTCAGGAAACTGCACAAGCACAGAGGTTGTGTCAACACTGTCAGCTTCAATACTGATGGGGACATTCTGGTGTCCGGTTCTGATGATTGGAGGGTTATTCTCTGGGACTGGGAAACTGGCCGTATCAAACTCTCTTTCCATTCTGGTCACAATAACAATGTTTTCCAGGCCAAGATCATGCCCCACTCTGAGGATCGAAGCATTGTCACCTGTGCTGCTGATGGACAGGTTAGACATGCTAAAATTCTTGAAAATGGAGGAGTGGAAACTAAGTTTCTGGCCAAGCATCAAGGAAGGGCTCATAAATTGGCTATTGAACCCGGTAGCCCTCATATATTTTATACATGTGGTGAAGATGGATTAGTACAGCATTTTGATCTGAGAACTGGGGTCGCTACAGAACTTTTTACATGCCAGCCAATCCAGGATAGATGGAACTATATGCCAGTCATCCATCTTAATGCTATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCCGTTGCTGGGACTGATGAATATACTAGACTCTATGATATTCGCAAATATAAATGGGATGGATCTACTGATTTTGGTCAACCAACCGACTTCTTTTGTCCTCCTCACTTGATTGGTGACGAGCGGGTTGGAATAACAGGCTTGGCCTTTTCTGAACAAAGAGAGCTGCTTGTGTCATACAATGACGAGTTTATTTACCTTTTTACCCAAGATATGGGTTTGGGACCCAACCCTGAACCTGGGTTTCCTAAATCTATGAATTGTGATGCAGGTGAACTTGGATTTAGTCATGGATCCGTGTGGTCTCAATCCAACATGGATGGCGATGAAAAAATCACCCCGCAAGTATTTAAGGGACACAGGAATTGTGACACAGTTAAGGGTGTTAACTTTTTTGGACCCAACTGTGAGTATGTGGTGAGTGGGTCGGACTGTGGTCGGATATTTGTATGGAAAAAGAAAAGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGCATGTTGTGAATTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTCTGCCCAAAATTATTGAGCAGAAACCGAAGGCTAGGGGCTGGATGTACCGGATAGCATCTCCTGAAGACTTGATGTTGCAACTGTTATCACTTCCAAGACGAAGGCTTAGGACAGAAAACAATGGAGAAAACTCAACTACAGATCGAGACCTTCTACAGTTGATACTGACATTCAATGCCAATAGTGACAGTTCTAATGATGATAATGATGATGATGATGATGATGCAGATACAACCAGTCAAGATGACTTGTTCTGTTAG 1500 0.4387 MNKRPITAVYKAIPDLCHRELGHLPPRNFALRLGASEDLVLRLDVLRKLHKHRGCVNTVSFNTDGDILVSGSDDWRVILWDWETGRIKLSFHSGHNNNVFQAKIMPHSEDRSIVTCAADGQVRHAKILENGGVETKFLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGVATELFTCQPIQDRWNYMPVIHLNAIAIDPRNPNLFAVAGTDEYTRLYDIRKYKWDGSTDFGQPTDFFCPPHLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPEPGFPKSMNCDAGELGFSHGSVWSQSNMDGDEKITPQVFKGHRNCDTVKGVNFFGPNCEYVVSGSDCGRIFVWKKKSGQLIRVMEADKHVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKIIEQKPKARGWMYRIASPEDLMLQLLSLPRRRLRTENNGENSTTDRDLLQLILTFNANSDSSNDDNDDDDDDADTTSQDDLFC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2650 499 Pfam WD domain, G-beta repeat 46 81 IPR001680 GO:0005515
Vra8g2650 499 Pfam WD domain, G-beta repeat 326 363 IPR001680 GO:0005515
Vra8g2650 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Vra8g2650 499 MobiDBLite consensus disorder prediction 478 493 - -
Vra8g2650 499 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 7 480 - -
Vra8g2650 499 Gene3D - 37 407 IPR015943 GO:0005515
Vra8g2650 499 MobiDBLite consensus disorder prediction 475 499 - -
Vra8g2650 499 SUPERFAMILY WD40 repeat-like 41 404 IPR036322 GO:0005515
Vra8g2650 499 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 7 480 IPR045151 -
Vra8g2650 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Vra8g2650 499 SMART WD40_4 242 280 IPR001680 GO:0005515
Vra8g2650 499 SMART WD40_4 84 126 IPR001680 GO:0005515
Vra8g2650 499 SMART WD40_4 131 171 IPR001680 GO:0005515
Vra8g2650 499 SMART WD40_4 42 81 IPR001680 GO:0005515
Vra8g2650 499 SMART WD40_4 189 224 IPR001680 GO:0005515
Vra8g2650 499 SMART WD40_4 321 363 IPR001680 GO:0005515
Vra8g2650 499 SMART WD40_4 366 405 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2650 Vra-Chr8 44410327 44416427 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2650 K11804 - gmx:100791300 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2650 8 44410327 44416427 Vra8g2650 8 44410327 44416427 ECH