Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2553 ATGAAGTGCTACAAAATCCAGTTATTGGTCACACTTTCATTCATTCTTTTGCTTCCAAACACCAAAGGCTGGGGAGAAGATGGCCACGCCATAGTTTGTAGGATTGCTCAGTCTCGCCTCAGCGATTCAGCAGCAGATGCTGTGAAAAATCTGCTGCCAAAATATGCACAAAACGACTTGGGGAGCGTGTGTTCATGGGCTGATCGTGTCAGGTTTTATTTGCACTGGTCTTCTGCATTGCACTTTGCTGATACGCCAGACAAGCTTTGCAATTATCAGTATGACAGGGATTGCAAGGATCAGGATGGTGAGAAGGGAAGATGTGTTGTGGGAGCAATTAAGAATTACACAGACCAACTCCTGGACTATGGCAAAGACACTCAATATAACCTCACACAAGCTCTTCTGTTCCTCTCTCACTTTATGGGAGATGTACATCAGCCTCTACATGTGGGATTTACCTCTGACAAAGGAGGCAATTTAATTAACATTCACTGGTACAGAAGGAAGCAAAATCTTCACCATAAAACATGGTCTGATCAAGTACGCGGATGGGAAACCTGCAATTCTAAGGAAACTACTTGCCCAGATATATATGCTTCTGAAGGCATTGAAGCAGCCTGCAAATGGGCATATAAAGATGCTCCTGAAGGTTCAGTGCTAGAAGACGATTACTTTCTATCACGTTTGCCAGAGGTCAGTTTGCGATTAGCTCAAGGAGGAGTTCGATTGGCTGCAACTCTCAATCGTATTTTTGGCTGA 762 0.4396 MKCYKIQLLVTLSFILLLPNTKGWGEDGHAIVCRIAQSRLSDSAADAVKNLLPKYAQNDLGSVCSWADRVRFYLHWSSALHFADTPDKLCNYQYDRDCKDQDGEKGRCVVGAIKNYTDQLLDYGKDTQYNLTQALLFLSHFMGDVHQPLHVGFTSDKGGNLINIHWYRRKQNLHHKTWSDQVRGWETCNSKETTCPDIYASEGIEAACKWAYKDAPEGSVLEDDYFLSRLPEVSLRLAQGGVRLAATLNRIFG* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2553 253 CDD S1-P1_nuclease 24 252 IPR003154 GO:0003676|GO:0004519|GO:0006308
Vra8g2553 253 PANTHER ENDONUCLEASE 4 176 253 IPR003154 GO:0003676|GO:0004519|GO:0006308
Vra8g2553 253 PANTHER ENDONUCLEASE 4 1 175 IPR003154 GO:0003676|GO:0004519|GO:0006308
Vra8g2553 253 PANTHER ENDONUCLEASE 2 1 175 - -
Vra8g2553 253 PANTHER ENDONUCLEASE 2 176 253 - -
Vra8g2553 253 SUPERFAMILY Phospholipase C/P1 nuclease 24 251 IPR008947 GO:0016788
Vra8g2553 253 Pfam S1/P1 Nuclease 24 175 IPR003154 GO:0003676|GO:0004519|GO:0006308
Vra8g2553 253 Pfam S1/P1 Nuclease 180 252 IPR003154 GO:0003676|GO:0004519|GO:0006308
Vra8g2553 253 Gene3D P1 Nuclease 24 175 IPR008947 GO:0016788
Vra8g2553 253 Gene3D P1 Nuclease 176 253 IPR008947 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2553 Vra-Chr8 43456087 43458016 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2553 K05986 - gmx:100775291 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2553 8 43456087 43458016 Vra8g2553 8 43456087 43458016 ECH