Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2455 ATGCAAATCCTCTGCCTCGCCATCATTTCCATCTCTTTCCTTCTTTTTCACAACACAAACACCATCGTCCTAGTCCAAGCCCTCACCTCACCCTCAGACATTGCAGCCCTCAGAGCCTTCAAGGCCTCAATCAAACCATCCTCCATCGCACCCTGGTCTTGCCTTGCCTCATGGAACTTCACCACCGACCCCTGCTCACTCCCTCGCCGCACCACCTTCATCTGCGGCCTCACCTGCACTCCTGATTCCAAAGCAATCAACCAAATCACTCTCGACCCAGCAGGGTACTCGGGCACACTCACCCCCCAAATCTCTCGACTCACACAACTCGCCACACTTGACCTCTCAGACAACAACTTCTTCGGCTCAATCCCCTCTTCAATCTCATCCCTCTCCAACCTCCAAACCTTAACCCTCCGATCCAATTTCTTCTCAGGCCCAATCCCTCCCTCCATAACCACCCTCAAATCACTCCAATTTCTCGACTTTTCGCACAATTCTCTTTCTGGGTATCTACCAAACTCCATGAACTCCCTCGCCAAACTCCGTAGACTCGATCTCAGCTTCAACAATCTAACCGGTTCAATCCCTAAACTCCCACCCAACTTGCTCGAACTCGCGATCAAGGCCAATTCTCTATCTGGGCCTCTCCAAAAACAGAACTTTGAAGGGATGAACCAGTTAGAAGTGGTGGAGCTAAGCGATAACGCCCTCACCGGTACGGTGGAGTCGTGGTTCTTCTCTCTACCGTCGCTGCAGCAGGTAAACTTGGCCAACAACACCTTCACGGCGGCCCAGATCTCAGGACCACGCCCGGACCGTGGGGGAATCGGCAGCCGCAGCAACCTCGTCGCACTCGACCTTGGGTTTAACAGAATCCAAGGCTACGCGCCCGCGAATCTCGCCTCTTTTCCCGTACTGTCATTTTTGTCGCTTCGCTACAACGCGCTACGTGGCGCGATCCCTCTGGAGTACGGCCAAATCAAGTCCATAAGGAGGCTCTTCCTCGATGGAAACTTCCTCCTCGGAAAGCCGCCACCCGGGCTTGTCGCCTCCGGCACGGAGGTTACCGGAAGTCTGGGGGACAATTGTCTGCAGGAGTGTCCAAGGTCGTCGCAGCTGTGCTCGCCCGCACAGAAACCAATCTCAGTTTGCAAGCGAGCCTACAGTGGTAGACCAACACCAATACCTGTTGTCGGTTAA 1203 0.542 MQILCLAIISISFLLFHNTNTIVLVQALTSPSDIAALRAFKASIKPSSIAPWSCLASWNFTTDPCSLPRRTTFICGLTCTPDSKAINQITLDPAGYSGTLTPQISRLTQLATLDLSDNNFFGSIPSSISSLSNLQTLTLRSNFFSGPIPPSITTLKSLQFLDFSHNSLSGYLPNSMNSLAKLRRLDLSFNNLTGSIPKLPPNLLELAIKANSLSGPLQKQNFEGMNQLEVVELSDNALTGTVESWFFSLPSLQQVNLANNTFTAAQISGPRPDRGGIGSRSNLVALDLGFNRIQGYAPANLASFPVLSFLSLRYNALRGAIPLEYGQIKSIRRLFLDGNFLLGKPPPGLVASGTEVTGSLGDNCLQECPRSSQLCSPAQKPISVCKRAYSGRPTPIPVVG* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2455 400 SMART LRR_typ_2 179 206 IPR003591 -
Vra8g2455 400 SMART LRR_typ_2 249 272 IPR003591 -
Vra8g2455 400 SMART LRR_typ_2 155 178 IPR003591 -
Vra8g2455 400 SMART LRR_typ_2 107 131 IPR003591 -
Vra8g2455 400 ProSiteProfiles Leucine-rich repeat profile. 181 203 IPR001611 GO:0005515
Vra8g2455 400 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Vra8g2455 400 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Vra8g2455 400 Pfam Leucine Rich Repeat 110 131 IPR001611 GO:0005515
Vra8g2455 400 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Vra8g2455 400 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 10 394 - -
Vra8g2455 400 SUPERFAMILY L domain-like 31 365 - -
Vra8g2455 400 Gene3D Ribonuclease Inhibitor 201 376 IPR032675 -
Vra8g2455 400 PRINTS Leucine-rich repeat signature 158 171 - -
Vra8g2455 400 PRINTS Leucine-rich repeat signature 179 192 - -
Vra8g2455 400 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Vra8g2455 400 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2455 Vra-Chr8 42568847 42570580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2455 82 396 Receptor kinase-like Gene Family AT3G05360 24.786 5.39e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2455 - - gmx:100801713 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2455 8 42568847 42570580 Vra8g2455 8 42568847 42570580 ECH