Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2423 ATGTTCACCCTGTCTCACGAGTTGGTCGTTCCCACCACCCAAAAGTTCAAACCCATCGTTGCACTTCTTCACTCTCGCTGTTCATGTTCCATTGCAGAACCCACCAACCTTGCCGACCTCCTACAAGGCAACCTTCCGGATTCGTACCTTCACCAAATCCACACACGCATTTTCCAACTTGGTGCGCACCAAGACAACCTCGTTGCCACGCGCCTCATTGGGCACTACCCATCACGTATTGCTCTTCGCGTCTTTCACCAACTCCAAAATCCAAACATCTTCCCTTTCAATGCCATCATCAGAGTTCTCGCCCAAGAGGGTAACTTTTTTCACGCCTTTTCTCTGTTCAACGATTTGAAACGGTATCCACTTTCGCCCAACGACTTTACTTTCTCTTTCCTCCTTAAGGCGTGCTTTCGGTCCAAAGATCTCCGTCACGTAGAACAGATTCATGTACATATTCAGAAGACGGGTTTCCTCTCCGACCCTTCTGTTTGCAATGGATTGGTTTCTGTGTACGCGAAAGGGTACAAACACTTGCCATCTGCCCGAAAAGTGTTTGATGAAATTCCTGACAAAAGGATAGTCAGTTGTTGGACTAGCTTGATCTCTAGTTTTGCTCGGTCTGGACAGAGTGAGGAGGCTTTGCGGCTTTTCCATGTGATGATTAGTCAGAACTTGCTTCCCCAAAGTGATACTATGGTCAGTGTTTTATCAGCCTGTTCTAGCCTTGAGGTGCCCAAAATTGAGAAATGGATTAACATTCTTTCAGAATTGATTGGTGATGGAGTGAGTACTAGAGAAACTTACTGTGATTCAGTTAACACGGCGCTGGTTTATTTGTTAGGTAAATTGGGGAAAGTTGAGAAGAGTAGAGAAGGGTTTGATCGAATTTCTGCAATAGGAAAAAGAAGCGTGGTTCCTTGGAATGCTATGATAAGTACATATGTTCAAAACGGTTATCCTGTGGAGGGTTTAAGTCTTTACCGTATGATGGTAGAAGAACAAGCCACTACACCTAACCATATCACAATGGTTAGTGTGCTTTCAGCATGTGCTCAAATTGGTGATTTGAGTTTTGGAAGTTGGGTTCACGATCACCTAATATCTCTAGGACATAAAGACACCATTGCCTCAAACCAAATTCTCGCCACATCTTTAATTGACATGTACTCAAAATGTGGCAATTTGGATAAGGCAAAGGAAGTTTTTGAGCATACAGTCAGCAAAGATGTGGTCTTATTCAATGCGATGATCATGGGTCTTGCAGTATATGGTGAAGCAGAGGATGCACTGAGACTCTTCTACAGAATGCCAGAATTCGGCTTACAACCCAATGCTGGAACGTTTCTTGGTGCTTTAAGTGCATGCAGCCACTCTGGACTGTTGGCAAGTGGGCGTTGGATATTCAGAGAAGTGTCCCTTTCCCCTAGTCTTACATTGGAGCATTGTGCTTGCTATATTGATCTTCTTGCAAGAGTAGGATGCATAGAAGAAGCTATGAAGGTTGTGATTTCCATGCCTTTCAAGCCTAACAATTTTGTCTGGGGTGCTTTGCTCGGAGGCTGCTTGCTCCATTCTAGAGTGGAGTTGGCCCAAGAGGTTTCCAGGAGGCTTGTTGAAGTAGACCCAGACAATTCTGCAGGCTATGTTATGTTGGCAAATGCATTTGCATCTGAGAATCAATGGAGTGATGTCTCGGAGCTGCGGCTAGAAATGAAAGAGAAGGGAATCAAGAAGCAACCAGGAAGTAGTTGGATTGTTGTGGATGGAGTTGTGCATGAGTTTCTCGTTGGCTGTTTGTCACATCCTAAAATTGAGAGCATATACCATACATTGGGTGGATTGGTGAAGCATATGAAAGTAGCAAGCCATTGCCTGCTTGTATGCTGTTGTTAA 1899 0.4434 MFTLSHELVVPTTQKFKPIVALLHSRCSCSIAEPTNLADLLQGNLPDSYLHQIHTRIFQLGAHQDNLVATRLIGHYPSRIALRVFHQLQNPNIFPFNAIIRVLAQEGNFFHAFSLFNDLKRYPLSPNDFTFSFLLKACFRSKDLRHVEQIHVHIQKTGFLSDPSVCNGLVSVYAKGYKHLPSARKVFDEIPDKRIVSCWTSLISSFARSGQSEEALRLFHVMISQNLLPQSDTMVSVLSACSSLEVPKIEKWINILSELIGDGVSTRETYCDSVNTALVYLLGKLGKVEKSREGFDRISAIGKRSVVPWNAMISTYVQNGYPVEGLSLYRMMVEEQATTPNHITMVSVLSACAQIGDLSFGSWVHDHLISLGHKDTIASNQILATSLIDMYSKCGNLDKAKEVFEHTVSKDVVLFNAMIMGLAVYGEAEDALRLFYRMPEFGLQPNAGTFLGALSACSHSGLLASGRWIFREVSLSPSLTLEHCACYIDLLARVGCIEEAMKVVISMPFKPNNFVWGALLGGCLLHSRVELAQEVSRRLVEVDPDNSAGYVMLANAFASENQWSDVSELRLEMKEKGIKKQPGSSWIVVDGVVHEFLVGCLSHPKIESIYHTLGGLVKHMKVASHCLLVCCC* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2423 632 Pfam PPR repeat 198 226 IPR002885 -
Vra8g2423 632 Pfam PPR repeat 385 406 IPR002885 -
Vra8g2423 632 Pfam PPR repeat 308 335 IPR002885 -
Vra8g2423 632 Pfam PPR repeat family 410 457 IPR002885 -
Vra8g2423 632 Pfam PPR repeat family 91 139 IPR002885 -
Vra8g2423 632 Gene3D Tetratricopeptide repeat domain 273 368 IPR011990 GO:0005515
Vra8g2423 632 Pfam E motif 526 587 IPR046848 -
Vra8g2423 632 PANTHER OS01G0913400 PROTEIN-RELATED 42 624 - -
Vra8g2423 632 SUPERFAMILY TPR-like 381 564 IPR011990 GO:0005515
Vra8g2423 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Vra8g2423 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Vra8g2423 632 Gene3D Tetratricopeptide repeat domain 97 272 IPR011990 GO:0005515
Vra8g2423 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Vra8g2423 632 Gene3D Tetratricopeptide repeat domain 473 596 IPR011990 GO:0005515
Vra8g2423 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vra8g2423 632 Gene3D Tetratricopeptide repeat domain 369 472 IPR011990 GO:0005515
Vra8g2423 632 PANTHER - 42 624 - -
Vra8g2423 632 TIGRFAM PPR: pentatricopeptide repeat domain 385 412 IPR002885 -
Vra8g2423 632 TIGRFAM PPR: pentatricopeptide repeat domain 96 127 IPR002885 -
Vra8g2423 632 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Vra8g2423 632 TIGRFAM PPR: pentatricopeptide repeat domain 309 335 IPR002885 -
Vra8g2423 632 TIGRFAM PPR: pentatricopeptide repeat domain 198 229 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2423 Vra-Chr8 42329817 42333879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2423 81 621 Glycoside Hydrolase AT3G49170 30.727 5.69e-84 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2423 - - gmx:100807506 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2423 8 42329817 42333879 Vra8g2423 8 42329817 42333879 ECH