Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2408 ATGTCTCACTCTTCTTTTTCCAACCACTGCCAACTTGGTCCACTTTCTTCTCTTCTCTCTTCTTTAGTCCTTGCCCTTCACCTTTTTTTCCTTCCTCTTTCTAAAGTCTACCTCTTTCTTTCTTACTTTCTCTCATTCAACCAAAAGATTGCTCACAAAGGAGGAATAATGGCAGTGACACCTTTCCTTTCCCTCTCTTTCTTGTTTCTCTTTCTCCATTACCCCCTCCTATCCCTGTCAACCAATCCGGAAGGGAATGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATGTGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTCCACGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAATGTTTCTGGGACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTTCAGTACCTGGAACTCTACAGAAATGACTTAACAGGAAAGATTCCTGAGGAACTTGGTTACTTGAAGTCACTAATCAGCATGGATTTGTATGATAACAAGTTGGAGGGGAAGATTCCAAAGTCCTTTGGAAAGTTGAAGTCACTTAAATTCCTGCGGATAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCATCTCACTGATCTCAAAATTCTTGATGTTTCTAATAACGACCTATGTGGAACAATACCAGTAGAGGGCAACTTCGAATCTTTCCCAATGGAAAGTTTTGAAAACAACAGGTTTTGTGGTCCTGAACTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA 813 0.4256 MSHSSFSNHCQLGPLSSLLSSLVLALHLFFLPLSKVYLFLSYFLSFNQKIAHKGGIMAVTPFLSLSFLFLFLHYPLLSLSTNPEGNALHALRSRLSDPNNVLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNDLTGKIPEELGYLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRINNNKLTGSIPRELTHLTDLKILDVSNNDLCGTIPVEGNFESFPMESFENNRFCGPELKGLVPYDFGC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2408 270 SUPERFAMILY L domain-like 83 257 - -
Vra8g2408 270 Pfam Leucine rich repeat N-terminal domain 82 121 IPR013210 -
Vra8g2408 270 Pfam Leucine rich repeat 175 232 IPR001611 GO:0005515
Vra8g2408 270 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 62 267 - -
Vra8g2408 270 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 62 267 - -
Vra8g2408 270 Gene3D Ribonuclease Inhibitor 81 263 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2408 Vra-Chr8 42232996 42235671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2408 62 258 Receptor kinase-like Gene Family AT1G71830 60.101 4.48e-71 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2408 - - var:108324167 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2408 8 42232996 42235671 Vra8g2408 8 42232996 42235671 ECH