Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2391 ATGAAAGGCTGCAACTTTTTGTTCATTACCATTTGCCTTTTACTGATATCAGGGCTTGGCGTCCATTCTTTGTCTTATGATTATTCTGCTACCACAAAGTGTTTAGTAGAACCTGAGAGAGCGCAGTATGGAGGAGGCATTATAGTAAATCCAGAATTTGATCACAACATAGATAGTTGGAGAGTGTTTGGAAAAGGGTCAATCAAGGAACAAATATCGAATGAAGGCAATAGATTCATTGTTGCTCACAACAGAACACAGCCCTTGGATAGTTTCTCTCAGAAGGTCCAACTTCAGAAAGGAATGCTATACACCTTTTCTGCTTGGTTTCAGGTGAGTGAAGGAAGTGACACGGTGTCAGTGATGTTCAGAACAAAAGAAAGTGAACTGGTACGAGGTGGCCAGGTGATAGCAAAACATGGATGCTGGACCCTTCTAAAAGGTGGCATAGCTGCAAACTTTTCAAGCCCTGTTGATATTCTTTTTGAGAGCAAAAACTCAACTGTGGAAATATGGGCTGACAATGTCTCGTTACAACCATTCACGAAAAAGCAGTGGAGATCACTACAAGACGCCAGCATTGAGAGGGTACGTAAGAGGAGAGTGAGATTCCAAATAACCCGTGTAAATGAAACAGCATTGAAAGGAGCTACAGTCATCGCCAGACCAGTAAAGTTGAACTTCCCATTTGGATGTGGAATGAACCATTACATCCTCACAAACAAAGACTACCAGAATTGGTTTGTGTCAAGGTTCAAATTCGCAACCTTCACTAATGAGATGAAGTGGTACAGTACAGAGAAAGAGCAAGGCGTGGAAAACTATACTGTCGCAGATGCCATGCTGAAATTTACCAAAGAGAATGGCATTTCTGTGAGAGGCCATAACATTTTCTGGGACGACCCAAAATATCAGCTTGAATGGGTCAAGGCCCTATCACCTGCGGATTTGAAAAAAGCAGCAGCAAAAAGAATGGAATCTGTGGTTTCAAGATACAAAGGACAACTGATTGCATGGGATGTGATGAATGAGAATCTACACTTCCACTTCTTTGAGGACAAACTCGGCCAAAACGCCTCTGCAGAAGCATATGCAACAGCTTACGAGCTTGATTCAACGCCAAAAATGTTCCTGAATGAGTATAACACCATTGAATATAGTGGGGATGAGGCCTCCAGCCCTGTCAACTATATGAAGAAAATTAAGGAGATTCTGTCATTTCCAGGAGTTGCTGGAATGTCAGCAGCAATAGGGTTGCAAGGCCATTTTGCAAGTGGCCAGCCAAACCTTGCTTACATGAGGTCATCCCTTGATCTTCTTGCTACAACTGGACTTCCAATGTGGCTCACAGAAGTCAGTGTGGATCCACAACCAAGTCAGGCAGAGTATTTGGAAGAGGTACTGAGAGAGGCGTACTCTCATCCTGGTGTTGATGGGATTATAATGTTTTCTGGTCCAGCACAAGCTGGTTTCAATACCACTACTCTGGCGGATGAGAATTTCAAAAATACTCCTGCTGGAGACGTTGTGGACAAGCTCATTCGGGAGTGGGGGACTGGGCCTAATATTGCCACAGCAGATGACAGAGGAATGGTAGATATTTCACTGCACCATGGAGATTATGATGTAACTGTCACACATCCTCGAATCCACTCCCCTAGAAAGTTGAATCTGAGTGTAAAGAGAGATTTATCCCTTGAAACCATTCATGTGAAAATGTATTAA 1725 0.4301 MKGCNFLFITICLLLISGLGVHSLSYDYSATTKCLVEPERAQYGGGIIVNPEFDHNIDSWRVFGKGSIKEQISNEGNRFIVAHNRTQPLDSFSQKVQLQKGMLYTFSAWFQVSEGSDTVSVMFRTKESELVRGGQVIAKHGCWTLLKGGIAANFSSPVDILFESKNSTVEIWADNVSLQPFTKKQWRSLQDASIERVRKRRVRFQITRVNETALKGATVIARPVKLNFPFGCGMNHYILTNKDYQNWFVSRFKFATFTNEMKWYSTEKEQGVENYTVADAMLKFTKENGISVRGHNIFWDDPKYQLEWVKALSPADLKKAAAKRMESVVSRYKGQLIAWDVMNENLHFHFFEDKLGQNASAEAYATAYELDSTPKMFLNEYNTIEYSGDEASSPVNYMKKIKEILSFPGVAGMSAAIGLQGHFASGQPNLAYMRSSLDLLATTGLPMWLTEVSVDPQPSQAEYLEEVLREAYSHPGVDGIIMFSGPAQAGFNTTTLADENFKNTPAGDVVDKLIREWGTGPNIATADDRGMVDISLHHGDYDVTVTHPRIHSPRKLNLSVKRDLSLETIHVKMY* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2391 574 Gene3D Glycosidases 219 520 - -
Vra8g2391 574 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 220 513 IPR001000 GO:0004553|GO:0005975
Vra8g2391 574 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 31 571 - -
Vra8g2391 574 SUPERFAMILY Galactose-binding domain-like 44 180 IPR008979 -
Vra8g2391 574 PANTHER GLYCOSYL HYDROLASE 31 571 IPR044846 GO:0004553|GO:0005975
Vra8g2391 574 Pfam Carbohydrate binding domain 46 147 IPR003305 GO:0016798
Vra8g2391 574 SMART glyco_10 261 513 IPR001000 GO:0004553|GO:0005975
Vra8g2391 574 Gene3D - 36 181 - -
Vra8g2391 574 SUPERFAMILY (Trans)glycosidases 215 520 IPR017853 -
Vra8g2391 574 Pfam Glycosyl hydrolase family 10 225 464 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2391 Vra-Chr8 42104486 42108333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2391 22 563 Glycoside Hydrolase AT4G33840 48.807 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2391 - - gmx:100777980 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2391 8 42104486 42108333 Vra8g2391 8 42104486 42108333 ECH