Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2381 ATGTTGCAAACCCTAGGAGGCGTAACCCCTCGCTTCGTGAACCGGTCATGGCTGCGAAACCTGACGGTGCGTGCAATGACATTCTCTTCCTCCTCCGATTATGGAGACCAGTCACGTGGTGGCCTTCCTCGTTTCTACTCCGAAATTCTTCCTCCTTCCAAGGGTAGTGTTATACGCGTGCAAGGTGATGAATTTTGGCATATGACAAAAGTACTGAGGTTAAGCACCAACGATAGGGTACAGCTGTTCAATGGAAAAGGAGGTCTTGTAGAAGGATGCATACAGGACATTGATCGCAGTGGGCTTGATTTTGTTGCATCGAGTGATTTGATATCAATACCTCAACAAAATACACAATTGCACGTATTTGCTGGTTTTGGTACGCTAAAGGGTGGTCGTGCAGACTGGCTTGTAGAAAAGTGCACAGAACTTGGAGCCAGTAGTGTAACTCCTCTATTGACTGAACGTTCTCCATCGATCTCAGAAAATCGGGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGTCAACGACTGCATGAAATGGTTCTGAAAGATCCCGTAGAGATTAATGACCTTTTGCACCTTCTTGGTCTATTTTCTGTCCCTCAGATTGCACAATCAAAGCTAGCTCTTGTTGCGACGGCGAAGGCAACTCCTGTTCTTAGTGCGTTGACGTCATTGGAAAAGGAAACCAGTGGCTTAATAATTATTGGACCAGAAGGCGATTTCACCGAGAAAGAAACAAGTATGATGATGGAAGCAGGTGCTACAGCTGTTAGTCTTGGACCTCATCGTCTTCGGGTTGAAACTGCCACGATATCACTTTTGGCAACTGTGATGTTATGGTCTGACTCGCTGCAAACTTCGGTCAGTTGA 888 0.4583 MLQTLGGVTPRFVNRSWLRNLTVRAMTFSSSSDYGDQSRGGLPRFYSEILPPSKGSVIRVQGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQDIDRSGLDFVASSDLISIPQQNTQLHVFAGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKDPVEINDLLHLLGLFSVPQIAQSKLALVATAKATPVLSALTSLEKETSGLIIIGPEGDFTEKETSMMMEAGATAVSLGPHRLRVETATISLLATVMLWSDSLQTSVS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2381 295 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 57 284 IPR006700 GO:0006364|GO:0008168
Vra8g2381 295 CDD RsmE-like 120 281 IPR046886 -
Vra8g2381 295 Pfam RNA methyltransferase PUA domain 61 104 IPR046887 -
Vra8g2381 295 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 42 291 IPR006700 GO:0006364|GO:0008168
Vra8g2381 295 Pfam RNA methyltransferase domain 118 283 IPR046886 -
Vra8g2381 295 SUPERFAMILY alpha/beta knot 118 287 IPR029028 -
Vra8g2381 295 Gene3D - 41 293 IPR029026 -
Vra8g2381 295 SUPERFAMILY PUA domain-like 43 102 IPR015947 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2381 K09761 - gmx:100777253 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2381 8 41997062 42000224 Vra8g2381 8 41997062 42000224 ECH