Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2282 ATGAGCAAGGCTGGGCAATCTCTGAAATTGGTTCTCTTGGATTTGATTCACAAGAGCAATGGCTTGAGATCCTTCAAGCAAATTCATGCGCATCTATTGACTTCTGCCCTTGTTGCCAATGACTTGGTTGTTTCCAAAGCTGCAATTTTTTTGGGAAAACATGTTACAGATGTTCATTACCCTTGCAATTTCCTGAAGCAATTTGATTGGAACTTGAGCTCTTTCCCTTGCAATTTGCTGATTTCTGGCTATGCCTCTGGCCACTTACCCTGGCTTGCAATCCTGATTTATAGATGGACTGTTAGGAATGGTTTTGTGCCTGATGTGTACACTATCCCAGCAGTTTTGAAATCTTGTGCTAAGTTTTATGGGATTGTAGAGATTAAACAGTTTCATTCCGTAGCTTTGAAGACAGGCTTGTGGTGCGACATTTATGTGCAAAACACTCTTGTCCATGTGTATTGCATTTCTGGGGACACTGTTGGTGCTGGCAAGGTGTTTGATGACATGCTTGTGAGAGACGTGGTCTCTTGGACTGGCTTGATATCTGGGTATGTCAAGGCTGGGTTGTTTAATGAGGCGATCGCATTGTTTTTGAGAATGGATGTGGAACCTAATGTAGCAACCTTTGTCAGCATACTTGGGGCTTGTGGGAAATTGGGTTGTTTAAATTTGGGGAAAGGAATTCATGGGTTGGGTCTCAAATGTCTGTTCGGGAAGGAGTTGGTGGTATGCAATGCTGTGTTGGATATGTATATGAAGTGTGAGTCTGTCACTGATGGAAGGCAAATGTTTGATGAGATACCTGAGAAAGATATTATTTCTTGGACTAGTATGATAAGCGGGTTAGTGCAGTGCCAGTATCCCAGTGAATCGCTGGACTTGTTCTGTCAAATGCAAGGCTCAGGTTTTGAGCCAGATGGAGTTATACTAACTAGTGTGCTTTCTGCTTGTGCCAGCCTTGGGCTTCTTGACTATGGCAGATGGGTCCATCAGTACATTGATCAATGCCGTATCAAGTGGGATGTTCATATAGGAACTGCATTGGTTGACATGTATGCAAAGTGTGGTTGTATAGACATGGCGCAGCATATCTTCAGTGGAATGCCTTCTAGGAATATCCGTACTTGGAATGCCTATATAGGTGGCCTAGCAATAAATGGACTTGGGAGGGAAGCATTGAAGCTATTTGAAGATTTGATAGTGTCTGGTGCAAAGCCTAATGAAGTGACATTTCTTGCAGTTTTAACAGCTTGCTGCCATTCTGGCTTGGTCAGCGAAGGCCGAAAGTATTTCAACGAGATGTCAAGTCCCCTCTACAATCTTTCTCCCTGGTTAGAACACTACGGCTGCATGGTTGATTTACTCTGCAGAGCTGGACTGGTGGAGGAAGCCGTGGAGTTGATAAAGACAATGCCCATGTCCCCTGATGTGCAGATCATAGGAGCGCTTTTGAGTGCCTGTAATACATATGGGAATGTTGGATTCACCCAAGAAATCTTGAAATCACTGCAGAATTTTGAATTCCGAGATAGTGGCATATACGTGCTTCTTTCTAATCTGTATGCCTCTAACAAGAAATGGGCTGACGTGAGAAATGTTAGGAGACTGATGAAGCAGAAAGGAATAAGCAAGGCTCCTGGGTCTAGCATTATAAGGGTGGATGGCAAGAGTCATGAATTTTTAGTTGGAGACAGTAGCCATCCTCAAAGTGAGGATATTTACGTACTATTGGACATCCTTGCCAATCAAACATACTCTGAGGGGCATATTAATACCCTCTGCTAA 1788 0.4334 MSKAGQSLKLVLLDLIHKSNGLRSFKQIHAHLLTSALVANDLVVSKAAIFLGKHVTDVHYPCNFLKQFDWNLSSFPCNLLISGYASGHLPWLAILIYRWTVRNGFVPDVYTIPAVLKSCAKFYGIVEIKQFHSVALKTGLWCDIYVQNTLVHVYCISGDTVGAGKVFDDMLVRDVVSWTGLISGYVKAGLFNEAIALFLRMDVEPNVATFVSILGACGKLGCLNLGKGIHGLGLKCLFGKELVVCNAVLDMYMKCESVTDGRQMFDEIPEKDIISWTSMISGLVQCQYPSESLDLFCQMQGSGFEPDGVILTSVLSACASLGLLDYGRWVHQYIDQCRIKWDVHIGTALVDMYAKCGCIDMAQHIFSGMPSRNIRTWNAYIGGLAINGLGREALKLFEDLIVSGAKPNEVTFLAVLTACCHSGLVSEGRKYFNEMSSPLYNLSPWLEHYGCMVDLLCRAGLVEEAVELIKTMPMSPDVQIIGALLSACNTYGNVGFTQEILKSLQNFEFRDSGIYVLLSNLYASNKKWADVRNVRRLMKQKGISKAPGSSIIRVDGKSHEFLVGDSSHPQSEDIYVLLDILANQTYSEGHINTLC* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2282 595 Pfam PPR repeat 448 473 IPR002885 -
Vra8g2282 595 Pfam PPR repeat 274 304 IPR002885 -
Vra8g2282 595 Pfam PPR repeat 243 273 IPR002885 -
Vra8g2282 595 Pfam PPR repeat family 173 217 IPR002885 -
Vra8g2282 595 Pfam PPR repeat family 373 421 IPR002885 -
Vra8g2282 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Vra8g2282 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vra8g2282 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Vra8g2282 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 256 - -
Vra8g2282 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 191 - -
Vra8g2282 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 589 - -
Vra8g2282 595 Gene3D Tetratricopeptide repeat domain 238 336 IPR011990 GO:0005515
Vra8g2282 595 PANTHER OS04G0488200 PROTEIN 257 589 - -
Vra8g2282 595 PANTHER OS04G0488200 PROTEIN 6 191 - -
Vra8g2282 595 PANTHER OS04G0488200 PROTEIN 192 256 - -
Vra8g2282 595 Pfam E motif 491 552 IPR046848 -
Vra8g2282 595 TIGRFAM PPR: pentatricopeptide repeat domain 449 472 IPR002885 -
Vra8g2282 595 TIGRFAM PPR: pentatricopeptide repeat domain 176 202 IPR002885 -
Vra8g2282 595 TIGRFAM PPR: pentatricopeptide repeat domain 410 436 IPR002885 -
Vra8g2282 595 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Vra8g2282 595 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Vra8g2282 595 TIGRFAM PPR: pentatricopeptide repeat domain 146 176 IPR002885 -
Vra8g2282 595 Gene3D Tetratricopeptide repeat domain 76 232 IPR011990 GO:0005515
Vra8g2282 595 Gene3D Tetratricopeptide repeat domain 373 561 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2282 Vra-Chr8 41090457 41096611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2282 79 591 Glycoside Hydrolase AT3G49170 34.933 5.57e-100 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2282 - - gmx:100815155 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2282 8 41090457 41096611 Vra8g2282 8 41090457 41096611 ECH