Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2280 ATGGGTTTGATGTGGGATAAATTTATATGGGCACTTCTTGTTGAGTGCATATTCCTTTCTGGTTTACCTCATTCTGGTAAAGCTTCAAAGTACGCATTTGTAAGAGAAGCAACATCTGCTCCACCATTCTTGTCTTATGACTACATTGTCATTGGTGGAGGAACAAGTGGGTGTCCCCTTGCAGCAACTCTCTCACAGGGTGCAAGAGTTTTAGTCCTTGAAAGAGGAGGTTCTCCTTACACAAACCCAGAGCGAATCCACCTAAAGAACTTTGTCCATTCCCTCGCTGACATAAGCCCTTCATCATTTTCCCAACCGTTCATATCCACAGATGGGGTCCTCAATGCCAGGGCTCGTGTTCTGGGTGGTGGCTCTGTGTTGAATGCAGGCTTCTATTCAAGGGCTAGCTCTGACTACATAAGGATTTCTGGTTGGAATGAGTCTTTGGCTGAGGAATCGTATAAATGGGTTGAAAAAAAGGTGGTTTTTGAGCCCCCTATGCTGCAGTGGCAGTCAGCAGTGAGGGATGGGTTGCTGGAAGTAGGAGTGTTGCCTTATAATGACTTTACTTATGATCACTTAAATGGGACTAAGATTGGAGGGACAATTTTTGATAAGAAGGGTAACAGGCACACTGCAGCTGATTTGTTAGAGTATGCTGATCCCAAGAACATTTCTGTTTATCTCCATGCCACAGTGCAGAAGATACTATTTAGATATAACACAGGAAAAAGAAGACCAGAAGCTTATGGAGTGATGTTCATAGATGCATTGGGAGTGATGCATAGAGCATACTTAAACAGAAAAGGAGAGAATGAGATAATCTTATCCGCTGGGGCAATTGGGAGCCCACAGTTGTTGATGCTGAGTGGGATTGGTCCTGCTAAACATCTGCAGGCTCATGGAATCACGGTGGTTTTGAATCGGCCCTGGGTGGGTCAAGACATGGCAGATAATCCAATGAACGTTCTGGTGGTTCCTTCCCCTTTGCCTGTTGAAGTCTCTCTGGTCCAAACAGTGGGCATCACAAAGTCTGGTAGCTTCATTGAAACAGGCAGTGGATTAAGTTTGGGACATTCTTGGTCTGAAAGACTTCAAAAGATTTTTGAATTTGTGTCAAACCAGTCTGGTCAGCCTTCGACGTTTTCCTCAGAAAACAAGCAGAGGGTTGCAGACTTGGTTAGATTTTTAACGGGTCCAATTCTGAAAGGAGGAGTCATTATTGAAAAGATCACAGGACCACGATCCACAGGTCATTTGGAGCTCATAACCACAAATCCTAGTGATAATCCATCAGTTACCTTTAATTATTTCAAGGATCCAGAGGACTTGAGAATCTGTGTTGAAGGCATGAAAACCATCATTGATGTGGTAAACTCAAAAGCATTATCAAAGTTCCGGTACCCCAACTTGCCAGTCCAAGCTCTAATGGACTTGATGTTGCTGATACCAATGAACTTGAGGCCAAAACATGTCAATACTGCTTATTCTTTACAACAGTATTGCATAGACACTGTGCTAACAATTTGGCATTACCATGGAGGGTGCCTCACTGGTAAAGTTGTTGATCATAATTATAAGGTTATTGGGGTCGATGCTCTGAGGGTAATTGATGGATCCACCTTTTATCGCTCACCAGGGACCAATCCTCAAGCCACTGTCATGATGCTTGGAAGGTATATGGGAGAGCAAATTATAAACAAAAGATTCTCCGGTGGACAGAAAAGTGAAGGGATCAATTGA 1743 0.4337 MGLMWDKFIWALLVECIFLSGLPHSGKASKYAFVREATSAPPFLSYDYIVIGGGTSGCPLAATLSQGARVLVLERGGSPYTNPERIHLKNFVHSLADISPSSFSQPFISTDGVLNARARVLGGGSVLNAGFYSRASSDYIRISGWNESLAEESYKWVEKKVVFEPPMLQWQSAVRDGLLEVGVLPYNDFTYDHLNGTKIGGTIFDKKGNRHTAADLLEYADPKNISVYLHATVQKILFRYNTGKRRPEAYGVMFIDALGVMHRAYLNRKGENEIILSAGAIGSPQLLMLSGIGPAKHLQAHGITVVLNRPWVGQDMADNPMNVLVVPSPLPVEVSLVQTVGITKSGSFIETGSGLSLGHSWSERLQKIFEFVSNQSGQPSTFSSENKQRVADLVRFLTGPILKGGVIIEKITGPRSTGHLELITTNPSDNPSVTFNYFKDPEDLRICVEGMKTIIDVVNSKALSKFRYPNLPVQALMDLMLLIPMNLRPKHVNTAYSLQQYCIDTVLTIWHYHGGCLTGKVVDHNYKVIGVDALRVIDGSTFYRSPGTNPQATVMMLGRYMGEQIINKRFSGGQKSEGIN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2280 580 PANTHER OSJNBA0019K04.7 PROTEIN 6 569 - -
Vra8g2280 580 Pfam GMC oxidoreductase 46 320 IPR000172 GO:0016614|GO:0050660
Vra8g2280 580 SUPERFAMILY FAD-linked reductases, C-terminal domain 317 515 - -
Vra8g2280 580 PIRSF Alcohol_oxidase 32 576 IPR012132 GO:0050660
Vra8g2280 580 SUPERFAMILY FAD/NAD(P)-binding domain 45 569 IPR036188 -
Vra8g2280 580 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 6 569 - -
Vra8g2280 580 Pfam GMC oxidoreductase 414 559 IPR007867 GO:0016614
Vra8g2280 580 Gene3D - 46 558 IPR036188 -
Vra8g2280 580 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Vra8g2280 580 Gene3D - 163 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2280 Vra-Chr8 41079250 41081807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2280 27 569 Miscellaneous Gene Families AT5G51950 60.838 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2280 - - vun:114192811 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2280 8 41079250 41081807 Vra8g2280 8 41079250 41081807 ECH