Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2251 ATGGGAAAGCAAAAACAACAAGTGATTTCGCGCTTCTTCGCTCGCAAAGCCAAATCTCCCTCTCCTCCGTCTCCCTCGTCTCCTTCTCCTCATTATTCTTCTCCCCGTTCCAACCATCCCACTCCCAAAATCTCCGCCACCGCCACATTCTCCCCTTCCAAACGCCGCCTTAAGTCCCAACTCACACCCCCCAGCAAGCTCCAGAAGCTTCAGGAACCTTCTTCCCCTTCACTTCACCAACGCTTCCTCCAAAAGTTTCTCGAACCTTCCTCTCCTGAACACCCTCCTCCCCCTTCCTCTTCCAAATGCCCAACCTACACTCCCCTCGAACAACAGGTCCTCCACCTCAGAACCAAACACCCCAACGTTCTCCTCATGGTCGAGGTCGGTTACAGGTACCGTTTCTTCGGCAAAGACGCCGAAAACGCTGCCAGAGTCTTAGGCATTTACGCCCACATGGATCACAATTTCTTAACCGCTAGTATACCAACTTTTCGATTGAATGTCCACGTCAGGAGACTCGTCAGTGCTGGGTATAAGGTCGGCGTGGTGCGGCAGACCGAGACCGCTGCCATCAAGGCCCACGGCTCCAACCGCTCTGCGCCGTTCGGGCGCGGGCTCTCGGCGCTTTACACGAAGGCTACGCTTGAGGCGGCGCCGGAGATTGGGGGAGGGGAGGATGAGTGTGGTGGAGAGAGTAATTACTTGCTTTGTGTGGTGGAGAAAAGTGTTGTGGGGGAGAAGGGGAATTGTGGGGTGGAGGGTGGTGCTGATGTGAGGATTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTATGGGGAGTTTTGTGATGGTTCTCTGAGGAATGCGCTCGAGGCTGTTGTTGTGAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCAAAGCAAACAGAAAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGCTGAGCGTGTTTCACGAGATTGCTTCACTGATGGGGGTGCTCTTTCTGAAGTCATGACCTTGTATGATAACATGAATGTAGATGGTCAACCAGATTCACTACAAAACAAGAATTCGAGGGAGCACAGAAGTCAGCAGTTAGTAATCAAGGAGGTGATGAACATGCCAGATTTGTCTGTCCAAGCTTTGGCCTTAACCATTCGGCATTTAAAGGAATTTGGTTTTGAAAGAATTTTGTGTTCAGGAGTTTCTTTAAGGCCCTTCTCAAACAATACGGAAATGACCCTTTCAGCCAATACACTTCAACAACTGGAGGTTTTGAAAAATAACAACGACGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCACACTCTTACTATATTTGGTTCTAGACTTCTTCGGCAATGGGTATCTCACCCATTATGTGACCGAACCTTAATCTCTGCACGTCTTCATGCTGTATCTGAAATTGCAGAGTGCATGGGATCTTGTAATGGCACAAACAATCTTGGACATATTGAAGACAATCCGGATGTAGTAATCATGCAACCTGAGTTAGCAAACATTCTTTCATTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAAAGGGGAATTACGAGAATTTTCCACTGCACTGCTTCTCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTTTCTCTGCTGGAAAACAGCTACAACAACTTAACATAGGAGAGGGGAATAATAACACATTGCGCTCCAATCTGTTAAAAAGGTTAATTTTGACTGCTTCCTCTGACAGTATAATTGCTAATGCTGCAAAAATGTTGTCATCTTTGAACATAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCACTGCTTCGGAGGGACAGTTCCCAGAGGTCATTAAAGCTCGTAAGGATTTCAAGCTGGCAGTGGAACAATTAGATTCTCTGATAGACTTGTATCGCAAATTGCTTAAAATGAAAAAAATGGAATTTATTACTGTTTCCGGAACAACTCATTTGATTGAGTTATCAACAGATGTAAAGGTTCCTTCAAACTGGGTGAAGGTAAATAGCACGAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTAACAGCATTGGACAGGTTGTCATTAGCAAAAGAGGAGCTCGGTGTTGCTTGCCGAGCTGCCTGGAATAGCTTTCTCAGGGACTTCAGTAAATACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGTACTCACTTGCCATTCTTTCAAGAAATAAGGGCTATGTTCGCCCTGTGTTTGTAGATAACCAAGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGATCACCTTACAAGAGAATTTTGTCCCAAATGATACAAACTTGCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCACGTCCTGGATAGGATCTACACCCGAATGGGTGCTTCTGACAGTATTCAAGAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTCCAATATTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGAACAAGTACACATGATGGTATGGCCATTGCTCACGCGACGTTGCATTATCTTCTGAAGCAAAAACGGAGCATGGTCCTCTTTGTTACTCACTATCCAAAGATTGCCAGCTTGTCAACTGAATTTCCTGGCTCTGTGGCAGCATATCACGTATCACATCTTACCTCACATGATGCAAGTAAAAATTCCAACTTGGATGATGATATAACTTATCTGTACAAGCTCGCACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACTGTTGCCATCGCATTGCATCAGTCGAGCCCTTGTTATGGCTTCCAAATTAGAAGCACTAGTAGATAGTAAAATGCATAGTAGATCGGGAAAGGAGCTATTATTGGATACGCAGGTGATCGGTCAAGAGCAAGAGCAAGAACAGCTTATGGCTGAACCACATCATTGTCTTCTTCAAGAGTTTGGTATAGCTTACAAAGATTTCTATCTAAACTTAAAAGCTGCAATACAAGATGATGACTGTGCAAAAAGCTTTCACCTGTTGAAACATGCCAGAAGCATTGCAAAGAGATTAATTGGCAGTTGA 3255 0.4507 MGKQKQQVISRFFARKAKSPSPPSPSSPSPHYSSPRSNHPTPKISATATFSPSKRRLKSQLTPPSKLQKLQEPSSPSLHQRFLQKFLEPSSPEHPPPPSSSKCPTYTPLEQQVLHLRTKHPNVLLMVEVGYRYRFFGKDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFGRGLSALYTKATLEAAPEIGGGEDECGGESNYLLCVVEKSVVGEKGNCGVEGGADVRIGIVAVEISTGDVVYGEFCDGSLRNALEAVVVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRAERVSRDCFTDGGALSEVMTLYDNMNVDGQPDSLQNKNSREHRSQQLVIKEVMNMPDLSVQALALTIRHLKEFGFERILCSGVSLRPFSNNTEMTLSANTLQQLEVLKNNNDGSEIGSLLQIMNHTLTIFGSRLLRQWVSHPLCDRTLISARLHAVSEIAECMGSCNGTNNLGHIEDNPDVVIMQPELANILSLVLTTLGRAPDIQRGITRIFHCTASPSEFVAVIQAIFSAGKQLQQLNIGEGNNNTLRSNLLKRLILTASSDSIIANAAKMLSSLNIDSADQGDLTKLITASEGQFPEVIKARKDFKLAVEQLDSLIDLYRKLLKMKKMEFITVSGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVVTALDRLSLAKEELGVACRAAWNSFLRDFSKYYAEFQAAVQALAALDCLYSLAILSRNKGYVRPVFVDNQEPVQIQICSGRHPVLEITLQENFVPNDTNLHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQEGRSTFLEELSETSHILQYCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLSTEFPGSVAAYHVSHLTSHDASKNSNLDDDITYLYKLAPGVSERSFGFKVAQLALLPSHCISRALVMASKLEALVDSKMHSRSGKELLLDTQVIGQEQEQEQLMAEPHHCLLQEFGIAYKDFYLNLKAAIQDDDCAKSFHLLKHARSIAKRLIGS* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2251 1084 Gene3D DNA repair protein MutS, domain I 99 222 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 SUPERFAMILY DNA repair protein MutS, domain II 231 433 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 Gene3D MutS, connector domain 230 417 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 Gene3D - 757 1038 IPR027417 -
Vra8g2251 1084 Pfam MutS domain II 234 396 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 Pfam MutS domain V 804 1001 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 SUPERFAMILY DNA repair protein MutS, domain III 422 754 IPR036187 -
Vra8g2251 1084 Gene3D - 599 725 - -
Vra8g2251 1084 MobiDBLite consensus disorder prediction 1 78 - -
Vra8g2251 1084 SMART DNAend 438 784 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 ProSitePatterns DNA mismatch repair proteins mutS family signature. 882 898 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 Gene3D - 420 749 - -
Vra8g2251 1084 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 87 1079 - -
Vra8g2251 1084 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 87 1079 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vra8g2251 1084 Pfam MutS domain I 107 217 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 1001 IPR027417 -
Vra8g2251 1084 Pfam MutS domain III 423 749 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 MobiDBLite consensus disorder prediction 31 78 - -
Vra8g2251 1084 SMART mutATP5 801 998 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra8g2251 1084 PIRSF Msh6 3 94 IPR017261 GO:0006298|GO:0030983
Vra8g2251 1084 PIRSF Msh6 90 1044 IPR017261 GO:0006298|GO:0030983
Vra8g2251 1084 SUPERFAMILY DNA repair protein MutS, domain I 101 215 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2251 Vra-Chr8 40763479 40772894 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2251 K08736 - gmx:100789883 1697.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2251 8 40763479 40772894 Vra8g2251 8 40763479 40772894 ECH