Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2249 ATGGTTAAGGTAACCATAGTTGGAAGGTTGAGCGATGGATTGCCTCTAGCACAAGGACTGAGATATACGAATGAAGAGTATGCATATCTTTCATGTTACAGGCAACAAGCAGAGTTCATTCTCCAAGAAATTTCAAGGGGAGCACTAATAGCTTCCAAGATGACTATTCATGTTCACAATTTCTGCTTCAACTACTTGGTCGAGAACGGAGTTGTTTTCATTGTATTAAGTGAGTCTACGTACCCAAGAAAACTGGCTTTTCATTACCTACAAGATATTCAAAAGGAGTTTGAGAANTTTGATAAAACCCTCATTGGCAAAATTACAAGGCCATACAGCTTTGTCAAATTTGATGGTATAATTGCAAACATCAGCAGACAGTACATTGACACAAGAACTCAGGCCAACCTGTCAAAACTTAATGCTAACCGGAAACAAGATGTAGATGTTGCTAGTCAAGATTTTTACGACATTGTAGAAAGGAAGAGAAATTCAGAAACAATGAGAAGATTACCGGTTACTCCTCAACCTGAATCCACAATATGGTGTTCTCCACGTCTTGAGGCGATTGCTTTGAAATGGACACCTATTATGATCCTTGTAATTACTTCTATGGCTCTTCTATGGGCTAGCTTAGTCCTCACAGACGACTTTATTATTTCAAGCTGGAACTTAAAGAAATGGTCCACTGGTATTAAATATGATGCAACATTGATGTTGCAGAAAATATAA 732 0.3784 MVKVTIVGRLSDGLPLAQGLRYTNEEYAYLSCYRQQAEFILQEISRGALIASKMTIHVHNFCFNYLVENGVVFIVLSESTYPRKLAFHYLQDIQKEFEXFDKTLIGKITRPYSFVKFDGIIANISRQYIDTRTQANLSKLNANRKQDVDVASQDFYDIVERKRNSETMRRLPVTPQPESTIWCSPRLEAIALKWTPIMILVITSMALLWASLVLTDDFIISSWNLKKWSTGIKYDATLMLQKI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2249 243 Gene3D Longin domain 1 129 - -
Vra8g2249 243 CDD Longin 5 128 IPR010908 -
Vra8g2249 243 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Vra8g2249 243 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Vra8g2249 243 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 221 IPR044565 GO:0005484|GO:0006888|GO:0006890
Vra8g2249 243 SMART Longin_2 36 120 IPR010908 -
Vra8g2249 243 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 221 - -
Vra8g2249 243 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2249 Vra-Chr8 40753445 40755272 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2249 K08517 - gmx:100781527 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2249 8 40753445 40755272 Vra8g2249 8 40753445 40755272 ECH