Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2242 ATGAATTCAATAACCCTTTTAGGTCCAAAGGTGGTCCACAAATTTTCCCATTCTTTGATTATTTTGCGGAGTTTATGTAGCCATCCGTTTGGTGGTGATGGATTTGAATGCATTGAGGAGCCTTTGAAAAACTTAGAATTAAATTGTGATTCTGCTGTGGATGGAACGCTCCGTTTAAACGAGGATTGGGGCTATAACCAAAAGCAGTTTTCACCGAGAAAAGGGTTCATAGAAAGTGTAAGGTTAGATGCTAAGAGGGTTCTTGATGTTCTCCGACAAGACGGTCCCGGTCTCGATGCCAGGTTGGTTTTAGGTGAGTTGCATGTGAGGCCATCAGGGCTTCTCGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTCTGAGAATAAAACTAGGTGTGCAAAGCTGGCATACAAATTTTTTGTGTGGTGTAGTCAGCAAGAGGGTTACCGGCATACTGCAAATGCATATCACTTACTTATGAACATATATGCGGAGTGTGAGGAGTTTAAGGCATTGTGGAGATTGGTTGATGAAATGATTGAGAAACGGCATCCGGCTACTGCTCGAACTTTCAATATATTGATTCGTACTTGTGGTGAGGCAGGATTGGCTAAGAAATTAGTGGAGAGGTTCATAAAATCAAAGACATTTAACTTTAGGCCTTTTAAGCACTCCTACAACGCAATCCTACATGGTCTTCTTGTTTTAAATCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGATGGATTTTCTTCAGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAATTTCACAGACTGTTTGACGAGATGGGTAGAAATGGATTTAATCCAGATTTTCACACCTTCAATATTCTACTTCATGTTCTTGGCAAAGGGGACAAACCGCTTGCAGCTCTCAATCTCTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACACTGATAGATGGACTCAGCAGAGCTGGAAATATGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGGTGTATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGTTGGTGAGCTTGAGAAAGCCCTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTGTGCAGGGCAGGAAAATTTGATGAAGCATGTTCAATGCTCAACGAAATGGAAACCAAAGGTTGTCGTCCAAACTCTGTTGTCTATGATTCTTTAGTGAGTTGTTTACGGAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAGATGACAGAGAAGAGGAAGTACACTCACATATATTCAAGATACGAACGGAACAAATGA 1440 0.3951 MNSITLLGPKVVHKFSHSLIILRSLCSHPFGGDGFECIEEPLKNLELNCDSAVDGTLRLNEDWGYNQKQFSPRKGFIESVRLDAKRVLDVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNINSENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLLMNIYAECEEFKALWRLVDEMIEKRHPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLFDEMGRNGFNPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNMDACKYFFDEMIKNGCIPDVVAYTVMITGYVVVGELEKALEMYQDMISREQIPNVFTYNSIIRGLCRAGKFDEACSMLNEMETKGCRPNSVVYDSLVSCLRNAGKTADAHEVIRQMTEKRKYTHIYSRYERNK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2242 479 Pfam PPR repeat family 364 413 IPR002885 -
Vra8g2242 479 Pfam PPR repeat family 260 306 IPR002885 -
Vra8g2242 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 465 IPR002885 -
Vra8g2242 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vra8g2242 479 Gene3D Tetratricopeptide repeat domain 241 350 IPR011990 GO:0005515
Vra8g2242 479 Gene3D Tetratricopeptide repeat domain 351 478 IPR011990 GO:0005515
Vra8g2242 479 SUPERFAMILY TPR-like 365 465 IPR011990 GO:0005515
Vra8g2242 479 Coils Coil 472 479 - -
Vra8g2242 479 Pfam PPR repeat 325 357 IPR002885 -
Vra8g2242 479 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 477 - -
Vra8g2242 479 SUPERFAMILY HCP-like 226 393 - -
Vra8g2242 479 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Vra8g2242 479 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Vra8g2242 479 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Vra8g2242 479 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Vra8g2242 479 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Vra8g2242 479 TIGRFAM PPR: pentatricopeptide repeat domain 437 465 IPR002885 -
Vra8g2242 479 Gene3D Tetratricopeptide repeat domain 114 240 IPR011990 GO:0005515
Vra8g2242 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vra8g2242 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vra8g2242 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vra8g2242 479 Pfam PPR repeat 228 257 IPR002885 -
Vra8g2242 479 PANTHER OS10G0506000 PROTEIN 1 477 - -
Vra8g2242 479 Pfam Pentatricopeptide repeat domain 423 466 IPR002885 -
Vra8g2242 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2242 189 475 Miscellaneous Gene Families AT4G11690 27.778 9.53e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2242 - - ccaj:109794849 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2242 8 40707220 40711317 Vra8g2242 8 40707220 40711317 ECH