Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2230 ATGGTTACACAGTTCGGCATCAAATTGGCCGTCCACCTCATCACTAACCACTTCGGCAATCTCGTCGCTAAAGTATGCAAAAATCTATTTAGTCATGGAGCCCTCACTTTGGATCAATTGGTTCGCTACTCGGAGCTTACTAAGGACCAAGTTAAGAACTCCCTACTCGTCTTAGTTCAACACAATTGTTGCCAAGCATTTGCTCCTGACGTTGACGATGATGATGTAGACAGATTGAGAGTTAGAACTCAGTACTTGGTGTTGTTTGATAACATAATCCATCGATTGAGGTTTTCCAAATTCTTGGAGACTGTGTCGCGGAAGCTTGATGAAGAATGTGTTGAACTTCTTGATGGTTTGCTTCGCGATGGTAGGCTTACCCTGAAACAAATGGTTGACAGAGCAAGTCAAGGGAAAGAAAATGCCGTGGATACAAAAGTTGTACGAGAGATACTGAGTAAGCTTTTAACAGCTCGACTTGTCGAACGCTGCCCTGTCCCTGAGCCAGTTGTTTCCACCTCATTTAAAGAAACTACTACTAGGAAGCGGGGTGCTAAGTCTGCCAAGATATTTGAAGCACATGAGACATTAGAGCAACGTGTTGTAGAAGCAGCAGTGCCTGGGGATGCAATCAGATTTTCATTCACCGCTGATATGAAACCTAATGTTGACAGAGAAACAAATTCTGATGATGATGAAATTGGTAGCATTCAACAGAATGATGAAAAAGAGGAGGAAATTCTTTGGCGTGCCAATTTTGAGGAGTTTATTCGTCATCTTAGACATCAGGCATTGATTGATAATATAAGAACTCAGCATGATGATGGAACTGCTACTGTCTTAAGTGCAGTATTGGAGGCAACAAAAACTGTAGAGAAAAAAGTGAAAATGGAGAATTCAGTTCCCCTGTCACTGGATACAATTACTGCAGAGGTGATGAAGACTGATACAGGACGAACGATGACTATAGATCGTATCAGAGCTTCCCTTAGCCTGTTGGGCTGTTCACAGAGGATGATTGTAGATGATGCATATAGTATTGATTTGAAGAAAATTATTGAGCGGGCTCAAAATGAAGAGGTTGAGTCAATTGTGTTGAAAAGGTATGGAAGGGATGCGTACAGAATGTTCAGGCTACTGTCAAAGGATGGTTGTTTTCATGACACCGATAAGATAGCAGCATCTACTCTGGTTGAGAAAAAGGAGGCTCCAAAGTTGCTATATAGGTTATGGAAGGACAATTACTTGTATATGGAGAAAGTAGTTGCGACGGGAGTGAAGCAAACAACTATTTTGATGTGGAAAGTCAGTAAACCTCTGCTTTGGGAACATGTACTGGATGAGATGTACCACGCTGCCTTAAATTTGAGCTTAAGAATGGCTTTTGAGCAGGAAAAGGATGAAGAGCTTTTAAATGTTCCTAGAGTCAAGCTTAACGAGGCAGGACCACTGCAGAAGAAATACAAACGGCTAGTAAGGGTCTGGCGTCTCCTGGGGTCATCATTGACGAAGCTCGATGAAGCTCTCATGCTTTTCCATGATTTCTGA 1548 0.4205 MVTQFGIKLAVHLITNHFGNLVAKVCKNLFSHGALTLDQLVRYSELTKDQVKNSLLVLVQHNCCQAFAPDVDDDDVDRLRVRTQYLVLFDNIIHRLRFSKFLETVSRKLDEECVELLDGLLRDGRLTLKQMVDRASQGKENAVDTKVVREILSKLLTARLVERCPVPEPVVSTSFKETTTRKRGAKSAKIFEAHETLEQRVVEAAVPGDAIRFSFTADMKPNVDRETNSDDDEIGSIQQNDEKEEEILWRANFEEFIRHLRHQALIDNIRTQHDDGTATVLSAVLEATKTVEKKVKMENSVPLSLDTITAEVMKTDTGRTMTIDRIRASLSLLGCSQRMIVDDAYSIDLKKIIERAQNEEVESIVLKRYGRDAYRMFRLLSKDGCFHDTDKIAASTLVEKKEAPKLLYRLWKDNYLYMEKVVATGVKQTTILMWKVSKPLLWEHVLDEMYHAALNLSLRMAFEQEKDEELLNVPRVKLNEAGPLQKKYKRLVRVWRLLGSSLTKLDEALMLFHDF* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2230 515 Gene3D - 252 346 IPR036388 -
Vra8g2230 515 Gene3D - 89 173 IPR036388 -
Vra8g2230 515 Gene3D - 2 75 IPR036388 -
Vra8g2230 515 Pfam RNA polymerase III subunit RPC82 151 354 IPR008806 GO:0003677|GO:0006351
Vra8g2230 515 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 8 68 IPR013197 -
Vra8g2230 515 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 515 IPR039748 GO:0003697|GO:0005666
Vra8g2230 515 Gene3D - 349 437 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2230 K03023 - gmx:100784750 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2230 8 40605132 40613438 Vra8g2230 8 40605132 40613438 ECH