Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2210 ATGGATGCTCCCCTGCTCGTGAACGGCGAAGGGGCGGCGCTGGTGGCGGAGGATGGCGACTACGTGGCGGCGAGGGGGTTCAAGAAGGTTAGCGAGGTGTTCTGGATCGAAAGCAAGAGGATGTGGCTCATTGCGCTGCCTATTGTTTTCAACATATGGTGCCAATACGGTACAAACTCTATCACCAGCATCTTTGTCGGACACCTCGGCGACATTGAACTCTCTGCTATCTCTCTCATCAACTCCGTCATTGGCACTTTCGCCTTTGGTTTCATGCTTGGGATGGGAAGTGCAACAGAGACGCTATGTGGACAAGCTTTCGGAGCTGGGCAGGTTAATATGCTTGGCGTTTATATGCAACGCTCATGGGTGATTTTATCTGTGACCAGCATTTTGCTGTTGCCACTATACATTTTTGCTGCTCCAGTTTTGAAGCTTCTTGGTCAGCAAAAAGATATAGCTGATCTTGCTGGAAATTTCGCTATTAAAGTAATTCCGCAATTCCTTTCACTTGCCTTCAATTTTCCAACGCAGAAGTTCCTTCAAGCGCAGAGTAAGGTTAACGTGATTGCATGGATTGGGTTGGGAGCTTTGTTTGTGCATGTTGGGTTGCTCTGGCTCTTCATTCAGATGTTAGAGTTAGGCTTAACTGGTGCAGCTTTGGCATTTGATATCACGAGTTGGGTGATTACAACCGCTCAACTTGTTTATGTCGTGGTCTGGTGTAAGGATGGATGGAAGGGATTGTCATGGTTGGCTTTTAAGGATATTTGGGCCTTTGTAAGGCTCTCTCTTGCATCAGCTATAATGCTTTGCCTTGAAGTTTGGTATATGATGAGTGTCATAGTTCTTGCTGGTCACCTTGACAATGCAGTGATTGCTGTTGATTCCCTCTCTATATGCATGAATATCAATGGGTGGGAACTCATGATCTTCATTGGAATAAACGCAGCTGTCAGTGTCAGAATTTCCAATGAACTTGGACTCGGACATCCAAGAACTGCCAAGTACTCTGTCTACGTGACAATCTTTCAGTCACTTTTCTTGGGAACCTTTTTCATGGCTGTTATTTTGGCGACTAAAGACTATTATGCTGTTATTTTTACCAACAGTCCGGTTTTGCAAAAGGCCGTTTCGAAGCTAGGATTCTTCCTGGCTATCACAATGGTTCTAAACAGTGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCCTGGTGGCCTACGTCAACATAGGTTGTTACTATTTATTTGGGCTTCCACTGGGGTTCCTTCTTGGTTATAAAGCAAATTTGGGGGTTGAGGGACTTTGGGGTGGTATGATGTGTGGAATTCTTCTCCAGACCTTGCTGCTCCTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTGGAAGAAACAAATGCTCGCATGCAGATATGGGGTGGACAACAAACTGAGGTTGATAAAATTGCTGCTTCAGCATAA 1482 0.4541 MDAPLLVNGEGAALVAEDGDYVAARGFKKVSEVFWIESKRMWLIALPIVFNIWCQYGTNSITSIFVGHLGDIELSAISLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVNMLGVYMQRSWVILSVTSILLLPLYIFAAPVLKLLGQQKDIADLAGNFAIKVIPQFLSLAFNFPTQKFLQAQSKVNVIAWIGLGALFVHVGLLWLFIQMLELGLTGAALAFDITSWVITTAQLVYVVVWCKDGWKGLSWLAFKDIWAFVRLSLASAIMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNINGWELMIFIGINAAVSVRISNELGLGHPRTAKYSVYVTIFQSLFLGTFFMAVILATKDYYAVIFTNSPVLQKAVSKLGFFLAITMVLNSVQPVISGVAVGGGWQALVAYVNIGCYYLFGLPLGFLLGYKANLGVEGLWGGMMCGILLQTLLLLLILYKTNWKKEVEETNARMQIWGGQQTEVDKIAASA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2210 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Vra8g2210 493 TIGRFAM matE: MATE efflux family protein 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra8g2210 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 475 - -
Vra8g2210 493 PANTHER PROTEIN DETOXIFICATION 12 475 - -
Vra8g2210 493 Pfam MatE 267 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra8g2210 493 Pfam MatE 47 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2210 Vra-Chr8 40418003 40422062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2210 K03327 - gmx:100799559 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2210 8 40418003 40422062 Vra8g2210 8 40418003 40422062 ECH