Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2201 ATGTGTGCACGACTTGGGAATTCCATTTGTTACTGTGTGCAGGTGATTGGTGTGATCTCCGTAATTGTGATATTGGGATCAGAAAAAGTGAAGGTTGCAGAAAGCAAGGGGGCGAATGGTGGAATTGAATACCCAGGCATTAATTGCAGAAAGCACAGTGCAGTTTTGACAGATTTTGGTGGAGTCGGTGATGGCGTTACATCCAATACCAAAGCCTTTCGAAATGCAATAAGCAATCTCAGTCACTATGCATCTGACGGCGGCGCACAACTCATAGTGCCACCCGGAAAATGGCTGACGGGACCCTTTAATCTCACAAGCCATTTCACTCTTTTTCTTCACAACAAAGCTCTTATTCTTGCCTCTCAGAATGAATCGGAATGGCCTCATCTTCCTGTGTTACCTTCTTATGGAAGAGGGAGAGATGCTCCTCATGGAAGGTTTAGCAGTCTAATTTTTGGAACTAACCTCACTGATGTTGTAATTACTGGTAAAAATGGTAGCATTGATGGACAAGGAGCTTATTGGTGGAAGAAGTTCCATAACAAAAAGTTGACTCTGACCAGGCCATACATGATTGAGCTCATGTACTCTGATCAAATCCAGATATCATCTCTCACTTTACTCAACTCTCCATCCTATTTTATCCATCCAATTTACAGCAGTAACATAATAATGCAAGGGCTTACCATTAATGCTCCAGTAAACTCTCCCAACACAGATGGGATAGATCCAGATTCATGTACAAATGTTAGTATTGAAGATTGCTACATTGTTTCTGGTGATGACTGCGTTTCAATAAAAAGTGGATGGGATGAGTATGGGATCAAATTTGGAATGCCATCTCAACACATAGTGATTAAAAGGCTTACTTGTATATCCCCTGATAGTGCGATGATTGCTTTAGGCAGTGAAATGTCTGGAGGAATCTCTGATGTTAGAGCTGAAGATCTGACTGCCATCAACACTGAATCAGCTATCACAATCAAAACAGCAGTGGGTAGAGGTGGGTATGTGAAAGACATATTTGTGAAAGGAATGAACCTGACAACCATGAAGTATGTGTTTTGGATGACTGGCTCTTACAAATCACACCCTGATCCATACTATGATCCCAAAGCACTACCCAACATTACTGGGATAAATTACAGAGACGTTGTTGCAACACAGGTCAAGATGTCTGCAAGACTCCAAGGAATTTCTAACAACCCTTTCACCAATATTTGCATCTCCAATGTCACCATCCAATTCAATGAAAAACCAAAGAAGCATCAATGGAATTGCACTGATGTTTCTGGAGTCACAAACAAGGTCACTCCTCCTCCTTGTCAATTGTTGCCAGAGAAAGAGCAACTGCAGTGTCCCTTTCCAATCAACTCTCTGCCCATTGAATCTGTTAAGCTCAAGTCTTGTTCTACCAATGCCTTCTTCTAA 1434 0.4163 MCARLGNSICYCVQVIGVISVIVILGSEKVKVAESKGANGGIEYPGINCRKHSAVLTDFGGVGDGVTSNTKAFRNAISNLSHYASDGGAQLIVPPGKWLTGPFNLTSHFTLFLHNKALILASQNESEWPHLPVLPSYGRGRDAPHGRFSSLIFGTNLTDVVITGKNGSIDGQGAYWWKKFHNKKLTLTRPYMIELMYSDQIQISSLTLLNSPSYFIHPIYSSNIIMQGLTINAPVNSPNTDGIDPDSCTNVSIEDCYIVSGDDCVSIKSGWDEYGIKFGMPSQHIVIKRLTCISPDSAMIALGSEMSGGISDVRAEDLTAINTESAITIKTAVGRGGYVKDIFVKGMNLTTMKYVFWMTGSYKSHPDPYYDPKALPNITGINYRDVVATQVKMSARLQGISNNPFTNICISNVTIQFNEKPKKHQWNCTDVSGVTNKVTPPPCQLLPEKEQLQCPFPINSLPIESVKLKSCSTNAFF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2201 477 Gene3D - 44 440 IPR012334 -
Vra8g2201 477 Pfam Glycosyl hydrolases family 28 149 432 IPR000743 GO:0004650|GO:0005975
Vra8g2201 477 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 20 473 - -
Vra8g2201 477 SUPERFAMILY Pectin lyase-like 50 451 IPR011050 -
Vra8g2201 477 PANTHER PECTIN LYASE-RELATED 20 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2201 Vra-Chr8 40352971 40355932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2201 8 472 Glycoside Hydrolase AT3G61490 63.502 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2201 - - gmx:100779166 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2201 8 40352971 40355932 Vra8g2201 8 40352971 40355932 ECH