Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2192 ATGTTATGTAGTAAAACAATTGCTAACACTTTGTTTCCATGCCGCTTCCTAGAAACGTGCTTGCAGGTTCTCTCTCTATGCAACTCAAAGATCCTGGAGGAGGGAACATGTGTCCATAGCATAATGATCAAAGTGGGTCTCCAACATGACTTATATTTTAGCAACAATTTGCTGTCTTTGTATGCGAAATGCTTTGGAGTTGGACCAGCACGCCATTTCTTTGATGAAATGCCTCACAAGGATGTTGTGTCATGGACTACGCTTCTATCTGCTCACACCAGGCACAGGTATCATTCTGAGGCCCTCCGGTTGTTTGACATGATGCTAGGTTCTGGTCAATGCCCCAATGAATTCACCTTGTCCAGTGCCTTAAAATCGTGTTCTGCCTTGGGAGAGTTTGAGTTTGGGGCTCAAATTCATGCCTCTGTGGTTAAGCTTGGGTTGGAGCTGAATCCGGTTCTTGGTACCACTTTGATTGATTTGTATACAAAGTGTGATGGTACTGTTGAGCCACACAAATTGCTTACCTTTGTAACGGATGGTGATGTTGTGTCTTGGACAACCATGATCTCTTCATTGGTGGAGACTAGTAAATGGAGTGAAGCGCTACAAGTCTACGTCAAAATGATTGAAGCGGGAGTTTACCCGAATGGGTTCACATTTGTCAAACTCTTAGGCGTTTCTTCTTTTCTTGGTTTGGGAATGGGTTGTGGGAAAATACTGCACGCACAGTTAATCAGATTTGGTGTGGAAATGAATCTGGTGTTGAAGACAGCAATTGTTGATATGTATGCAAAATGCAGGCGGATAGAAGATGCAATTAAGGTCTCAAATCAGACACCTGAATGCGATGTGTACTTATGGACTACCATAATCTCTGGATTTATTCAAAATTTTCAGATTAGAGAGGCCGTTAATGCGTTTCTTGATATGAGATTGTCTACAACTCAACCAAATAATTTTACATACGCTAGTTTATTGAATGCTAGCTCCTCAATTTTATCATTGGAGCTAGGGGAACAGTTTCATTCACTGGTCATCATGGTTGGATTGGAGGATGATATTTTTGTTGGAAATGCACTGGTAGATATGTACATGAAATGCTCACAGACCCCAGCAAATGGTGTGGAAGCTTTTAGAGGGATAAACTCTCCAAATGTCATCTCTTGGACTTCTTTGATAGCTGGTTTTGCAGAACATGGTTTGGAAGAAGAATCATTTCAGTTGTTCGGGGAAATGCAAGCAGCTGGAGTGCAACCAAATTCCTTTACACTATCTGCTATTCTTGGAGCTTGCAGTAAAATGAAATCTGTTTTTCAAACAATGAAAATCCATGGACATATCATAAAAACAAAAGCAGACGTGGACATAGCTGTAGGGAATGCTCTTGTAGATGCTTATGCTGGAGGAGGAATGACAGATGAAGCATGGTCAGTTATTCACAAGATGAGCCACAGAGATCTCATCACATACACAAGTTTAGCAGCAAAATTAAACCAAAGGGGAGATCACGAAATGGCATTAAAAGTCATCGCTGACATGTGCAACGATGACGTTAAGATGGATGAATTTAGCTTGGCAAGTTTTTTATCAGCAGCAGCTAGCTTAGGCACTATGGAAACTGGAAAGCAGCTACACTGTTACTCAGTAAAATCAGGTTTCGAAATATGTAACTCATTTTCAAATAGCCTTGTTCACTTGTACAGTAAGTGTGGTAGCATGCATGATGCATACAGAGCTTTCAAAGATATACACGAGCCAGATACAGTGTCATGGAATGGTTTGATATCTGGATTGGCATCAAATGGTCATATATTCGATGCTCTTTCTGCCTTTGATGACATGAGGTTAGCGGGAGTTAAGCCTGATTCATTCACATTCTTATCACTGATGTTTGCTTGCAGCCAAGGTAGTTTATTGAATCAGGGTCTTGATTATTTCTATTCTATGGAAAAAACGTATGATATAACACCAAAGTTGGATCACTATGTGTGTTTAATTGATCTCCTCGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCATGCCAGATTCTGTAATTTATAAAACCTTATTAAATGCTTGCAAATTACATGGAAATGTGCTACTGGGAGAGGATATGGCAAGGAGATGTCTTGAGCTTGATCCATGTGATCCTGCAGTATATTTGCTGCTTGCTAGCTTGTATGACAATGCCAGACTATCTGATTTCGGCGACAAGACTCGTAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGCCCCAGGCACTGTTGGATGGAGGTAAGGGGTAGGATTCGTGTCTTTTCTGCAAGTGAGAAGATAGATAAGGGTGACATTCATGAAAAGCTAGAGTATTTTATAACTGAATTGAAGAATAGAGGGTATCCATACCAAGAGAATGAAGATAAGTTATACCACCCAGAGCAATTAGCCCTTGCATTTGGTGTTCTTACTGCACCAACTATGGCTCCAATACGCATAAACAAGAATTCTGCTATCTGCAATCACTGTCATTCTTTTATGATGCATCTGACAGAATTTGTTGATAGGGAGATAATTGTGAGGGATAGGAAACGATTCCATTTCTTTAAGGAAGGCGAGTGTTCATGTAGAGGTCACTCCTAG 2646 0.407 MLCSKTIANTLFPCRFLETCLQVLSLCNSKILEEGTCVHSIMIKVGLQHDLYFSNNLLSLYAKCFGVGPARHFFDEMPHKDVVSWTTLLSAHTRHRYHSEALRLFDMMLGSGQCPNEFTLSSALKSCSALGEFEFGAQIHASVVKLGLELNPVLGTTLIDLYTKCDGTVEPHKLLTFVTDGDVVSWTTMISSLVETSKWSEALQVYVKMIEAGVYPNGFTFVKLLGVSSFLGLGMGCGKILHAQLIRFGVEMNLVLKTAIVDMYAKCRRIEDAIKVSNQTPECDVYLWTTIISGFIQNFQIREAVNAFLDMRLSTTQPNNFTYASLLNASSSILSLELGEQFHSLVIMVGLEDDIFVGNALVDMYMKCSQTPANGVEAFRGINSPNVISWTSLIAGFAEHGLEEESFQLFGEMQAAGVQPNSFTLSAILGACSKMKSVFQTMKIHGHIIKTKADVDIAVGNALVDAYAGGGMTDEAWSVIHKMSHRDLITYTSLAAKLNQRGDHEMALKVIADMCNDDVKMDEFSLASFLSAAASLGTMETGKQLHCYSVKSGFEICNSFSNSLVHLYSKCGSMHDAYRAFKDIHEPDTVSWNGLISGLASNGHIFDALSAFDDMRLAGVKPDSFTFLSLMFACSQGSLLNQGLDYFYSMEKTYDITPKLDHYVCLIDLLGRGGRLEEAMGVIETMPFMPDSVIYKTLLNACKLHGNVLLGEDMARRCLELDPCDPAVYLLLASLYDNARLSDFGDKTRKLMRERGLRRSPRHCWMEVRGRIRVFSASEKIDKGDIHEKLEYFITELKNRGYPYQENEDKLYHPEQLALAFGVLTAPTMAPIRINKNSAICNHCHSFMMHLTEFVDREIIVRDRKRFHFFKEGECSCRGHS* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2192 881 Pfam DYW family of nucleic acid deaminases 811 879 IPR032867 GO:0008270
Vra8g2192 881 Gene3D Tetratricopeptide repeat domain 539 791 IPR011990 GO:0005515
Vra8g2192 881 Gene3D Tetratricopeptide repeat domain 7 134 IPR011990 GO:0005515
Vra8g2192 881 Gene3D Tetratricopeptide repeat domain 334 448 IPR011990 GO:0005515
Vra8g2192 881 Gene3D Tetratricopeptide repeat domain 135 240 IPR011990 GO:0005515
Vra8g2192 881 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Vra8g2192 881 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Vra8g2192 881 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Vra8g2192 881 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Vra8g2192 881 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Vra8g2192 881 Gene3D Tetratricopeptide repeat domain 449 521 IPR011990 GO:0005515
Vra8g2192 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vra8g2192 881 Pfam PPR repeat 562 585 IPR002885 -
Vra8g2192 881 Pfam PPR repeat 663 686 IPR002885 -
Vra8g2192 881 Pfam PPR repeat 461 486 IPR002885 -
Vra8g2192 881 Pfam PPR repeat 489 517 IPR002885 -
Vra8g2192 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Vra8g2192 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 802 - -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 206 514 - -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 331 - -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 99 434 - -
Vra8g2192 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 21 331 - -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 99 434 - -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 206 514 - -
Vra8g2192 881 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 316 802 - -
Vra8g2192 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vra8g2192 881 Pfam PPR repeat family 80 127 IPR002885 -
Vra8g2192 881 Pfam PPR repeat family 284 329 IPR002885 -
Vra8g2192 881 Pfam PPR repeat family 182 225 IPR002885 -
Vra8g2192 881 Pfam PPR repeat family 587 634 IPR002885 -
Vra8g2192 881 Pfam PPR repeat family 385 433 IPR002885 -
Vra8g2192 881 Gene3D Tetratricopeptide repeat domain 241 333 IPR011990 GO:0005515
Vra8g2192 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2192 Vra-Chr8 40301395 40304417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2192 101 880 Glycoside Hydrolase AT3G49170 31.931 6.72e-144 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2192 - - gmx:100791770 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2192 8 40301395 40304417 Vra8g2192 8 40301395 40304417 ECH