Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2176 ATGGATGCCTTCAGCATTGAACTCTTTTTGCTTTGTTTCTTATGTTCAATCACCTTCAATTGTGTCATGTGCAGTTTGGAGATTCATTGCAACGAGAAGGACATGAACACACTCCTACACTTCAAACAAGGACTCATAGATCCTTCAGGTGTTCTCTCCTCATGGTTCCCAAAGTTAGATTGTTGTGAATGGACTGGAGTCAAGTGTGATGATATCACAGCAAGAGTAACAGAACTTTATCTCCCTTGTTATACAAATCGTCCCCAACTTGTTCCTTATGGAGACAAGGATGACAAATCACACTGCTTATCAGGTGCATTCAGCCTCACTTTGCTGGAACTTGAATTTTTGAACTACTTGAATTTGAGTAACAATGACTTCAAGTTTTTCAAATATAGTTCAATCGGTAGCCGTAGATGTGACGACTTCTCAACGGATAACCTTCCTTATCTGTTTGGAAACACTACCAAGCTTCGCTATCTTGATTTATCATATAACTATGATCTTCTTGTCAATGATCTGCATTGGATTTCTCCACTGACCTCTTTGCAATATCTCAACCTTGGTGGTATTTATATTCACAAAGACATTGATTGGCTTCAATCAGTAACCATGCTCCCTTCTCTTGAAGAGTTGCACTTGGTGGGTTGTCAACTTGAAAACATCTATCCATTTCTCGAGTACGCTAATTTTACTTCACTTCAGGTTCTAAATCTTGCTCACAATCATTTTGTATCTGAATTTCCTACCTGGTTATTCAATCTTAGTAGTGGCATCTCTCTTATTGACCTTAGCCAAAATCAAATACATAGCCAACTGCCTAAAACATTGCCATGTTTTAGAAGTCTGAAGTCCTTGGTTTTGTCTCGTAATTATCTCAAAGGAACCATTCCAGATTGGTTAGGACAACTTGAACAACTACAAGAACTTGATCTTTCTTATAATTTTTTATCTGGTTCAATTTCCACAAGTTTGGGAAATCTATCATCCTTGACTATTTTGATACTTGAATCAAATGAGTTCAATGGAAGTCTTCCAGATGATCTTGGGAAACTCTTCAACTTGGAGACCCTTCGAGTTGCAACAAATTCCTTAACTGGAATTGTGTCGGAAAGAAATTTACTTTCCTTAAAAAATCTGAAGGAACTTTCATTGAGTTCACCTGGCTTGAACTTTGATTTTGATTCTGAATGGGTCCCTCCCTTTCAACTGAAACATATTAGATTGGGCTATGTGAGAAACAAATTTCCTGCATGGGTATTCAAACAAAGTTCTCTGAAATATCTTACAATTGGAGATTCAACCACTTCATTTGAACCTCTTGACAAGTTTTGGAAGTTTGCTACTCAACTTGAATTTATCTCCTTAGAAAGAAACACGATCAATGGGGACATGTCAAATGTTGTGCTAAACTCGAAAGTCGTTTGGTTAGTGGGGAATAATTTAGGAGGTGGCGTGCCTCGAATAACATCAGAAGTGGTTGTTTTACACTTACGTAATAACTCTTTGTCAGGATCCATTTCTACTATCTTGTGTCAAATTATGACAAATAAAAGCAATTTAGTTCACTTGAATATGGCTTATAATAATTTATCTGGAGAACTAACGGATTGTTGGAAGAATTGGGAGTCCCTGGTTCTTATCAATTTAGGACACAACAACCTTAAAGGTAAGATTCCTAACTCAATGGGCTCTTTGTCAAACCTTCGTTGTCTGTCTCTGGGGAACAATATGTTATCTGGGGAGGTTCCTCTTTCTCTAAAAGAGTGCCATAATCTTTGGATATTTGATGTTGGTCACAATAATCTTTCTGGGGTTCTACCAAGCTGGTTTGGACAAAATATTAAAGGTCTTAAATTGGGATCAAATCAATTCAGTGGCACTATTCCCAGACAGATATGTCAACTTTATTCCTTAATGGTGATGGATTTTTCAAGTAACAGATTATCAGGATCTATACCCGACTGTTTGCATAATATAACAACCATGGTTGCTAATTATGCTTCAACTCGTAGAGTAGGCTTCATCCTTAATTTTCCTGGTTTTTCAATAACCGTTGTGACTAGCATCCAGATCCTTATAAAAGGAAACGAGTTATCATATGTTGACCTGATGAATGTGATTGATCTCTCAAATAACAACTTGTATGGAAATGTGCCTTCAGATGTGTATATGCTCACTGGACTACAGTCCTTAAATTTGTCCCATAATCACTTAATTGGAACAATATCAGAAGAGATTGTCAACTTGAAATCCTTAGAATCGATTGATCTCTCAAGAAATAATTTCTCTGGACAAATTCCAAGTTCCATGTCCAACTTACATTATCTCGAGGTCTTGAATTTTTCATTCAACAATTTTATGGGCAAAATTCCATCAGGGACCCAACTTGGTTTTACAGAACTCAGCTATATCGGCAATCCTGGCCTCTGTGGACCTCCACTTACAGATATTTGTCCGAAAGATGAAGAACTCCATCGTACAAACCCCGCGGAAGAGGAAGAAGAAGAAGATGATAAATTTGAAATATATTCGTGGTTTTACATGGGTCTGGGAATTGGGTTTGCTGTGGGATTCTGGGGAGTTCTAGTGAGTGCCATTTTTTTCAACAGAAGATGCAACCGTGCCTACATCCATTGA 2640 0.3754 MDAFSIELFLLCFLCSITFNCVMCSLEIHCNEKDMNTLLHFKQGLIDPSGVLSSWFPKLDCCEWTGVKCDDITARVTELYLPCYTNRPQLVPYGDKDDKSHCLSGAFSLTLLELEFLNYLNLSNNDFKFFKYSSIGSRRCDDFSTDNLPYLFGNTTKLRYLDLSYNYDLLVNDLHWISPLTSLQYLNLGGIYIHKDIDWLQSVTMLPSLEELHLVGCQLENIYPFLEYANFTSLQVLNLAHNHFVSEFPTWLFNLSSGISLIDLSQNQIHSQLPKTLPCFRSLKSLVLSRNYLKGTIPDWLGQLEQLQELDLSYNFLSGSISTSLGNLSSLTILILESNEFNGSLPDDLGKLFNLETLRVATNSLTGIVSERNLLSLKNLKELSLSSPGLNFDFDSEWVPPFQLKHIRLGYVRNKFPAWVFKQSSLKYLTIGDSTTSFEPLDKFWKFATQLEFISLERNTINGDMSNVVLNSKVVWLVGNNLGGGVPRITSEVVVLHLRNNSLSGSISTILCQIMTNKSNLVHLNMAYNNLSGELTDCWKNWESLVLINLGHNNLKGKIPNSMGSLSNLRCLSLGNNMLSGEVPLSLKECHNLWIFDVGHNNLSGVLPSWFGQNIKGLKLGSNQFSGTIPRQICQLYSLMVMDFSSNRLSGSIPDCLHNITTMVANYASTRRVGFILNFPGFSITVVTSIQILIKGNELSYVDLMNVIDLSNNNLYGNVPSDVYMLTGLQSLNLSHNHLIGTISEEIVNLKSLESIDLSRNNFSGQIPSSMSNLHYLEVLNFSFNNFMGKIPSGTQLGFTELSYIGNPGLCGPPLTDICPKDEELHRTNPAEEEEEEDDKFEIYSWFYMGLGIGFAVGFWGVLVSAIFFNRRCNRAYIH* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2176 879 Gene3D Ribonuclease Inhibitor 374 822 IPR032675 -
Vra8g2176 879 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vra8g2176 879 Gene3D Ribonuclease Inhibitor 30 224 IPR032675 -
Vra8g2176 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 16 319 - -
Vra8g2176 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 280 878 - -
Vra8g2176 879 SUPERFAMILY L domain-like 345 487 - -
Vra8g2176 879 SMART LRR_typ_2 636 659 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 750 774 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 206 229 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 231 255 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 566 590 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 304 327 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 726 749 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 328 352 IPR003591 -
Vra8g2176 879 SMART LRR_typ_2 114 137 IPR003591 -
Vra8g2176 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 280 878 - -
Vra8g2176 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 16 319 - -
Vra8g2176 879 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Vra8g2176 879 Gene3D Ribonuclease Inhibitor 321 373 IPR032675 -
Vra8g2176 879 Pfam Leucine Rich Repeat 729 750 IPR001611 GO:0005515
Vra8g2176 879 PRINTS Leucine-rich repeat signature 307 320 - -
Vra8g2176 879 PRINTS Leucine-rich repeat signature 726 739 - -
Vra8g2176 879 SUPERFAMILY L domain-like 113 371 - -
Vra8g2176 879 SUPERFAMILY L domain-like 474 816 - -
Vra8g2176 879 Gene3D Ribonuclease Inhibitor 225 320 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2176 Vra-Chr8 40135980 40139185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2176 11 819 Receptor kinase-like Gene Family AT4G13920 29.751 2.04e-75 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2176 - - gmx:100785934 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2176 8 40135980 40139185 Vra8g2176 8 40135980 40139185 ECH