Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1723 ATGGCAGATCAAACCCGGGATTCAGGAACCGTTTCCGTTCAACCTTCACCTGAAAGAAGGAAGCTTCCCAACTTTCTGCTATCTGTCAGACTTAAGTATGTCAAGCTTGGCTACCACTATGTAATCTCCAATGCTATGTACCTTTTGCTTATACCCTTTATTGGGGTAGCTTCTGCTCATCTGTCAACTTTCTCTTACCAAGATGTTGCTCAATTATGGGAAAACCTAAAGTTCAATCTTGTCTCGGTCACTCTATGTTCTAGTCTCATAGTGTTCCTTGTTACCTTTTACTTCATGAGCCGTCCAAGAGGTGTTTACTTGGTGGACTTTGCCTGTTACAAACCAGAGCCGGACTGCACTTGCACAAGGGAGACTTTCATGGACCGCTCTGCGAAAACCGGGGTGTTTTCAGAGGAGAACTTGGCCTTTCAGAAGAAAATACTTGAGAGGTCTGGTTTGGGGCAGAAGACATACTTGCCTCCGGCAATCTTGAGTCTCCCACCAAACCCCTGTATGGCTGAAGCAAGGAAAGAAGCGGAGCAAGTAATGTTTGGAGCTATTGACCAGCTTCTGGCAAAAACTGGGGTTAAGGCAAAGGATATTGGGATTTTGGTGGTGAATTGTAGCTTGTTCAACCCCACACCATCTCTCTCTGCAATGATTGTGAACCACTACAAGTTGAGAGGGAACATCCAAAGTTATAATCTTGGTGGCATGGGTTGCAGCGCTGGCCTTATCTCCATAGACCTTGCCAAGCAGCTCCTCCAGGTTCATCCAAATTCTTATGCCTTAGTGGTAAGCATGGAGAATATCACTCTGAACTGGTATTTTGGCAACAACCGGTCAATGCTTGTTTCAAATTGTCTGTTCAGAATGGGTGGAGCAGCAGTCCTTCTCTCCAACAGGTCTTCTGATCGCAGAAGAGCCAAATACCAATTGATCCACACAGTGCGTACTCATAAGGGTGCAGATGACAAATGCTACGGTTGCGTTTTCCAAGAAGAGGATGAGAAGAAAACAATTGGTGTGGCACTCTCAAAGGACTTAATGGCTGTTGCTGGAGAAGCCCTGAAGACCAATATCACAACACTTGGGCCATTAGTACTTCCGATGTCAGAGCAGCTTTTGTTTTTCGCAACTTTGGTGGCTAGAAAAGTGTTCAAGATGAAGATAAAGCCCTACATCCCTGACTTCAAGCTAGCTTTTGAGCACTTTTGCATCCATGCTGGAGGAAGAGCAGTGTTGGATGAGTTGGAGAAGAATCTGGAGCTGAGTGATTGGCACATGGAGCCATCCAGAATGACTCTGAATAGGTTTGGTAACACTTCTAGCAGTTCCTTGTGGTATGAACTGGCCTACACTGAAGCTAAAGGGAGAATCAGAAAAGGTGACAGGACTTGGCAGATAGCATTTGGCTCTGGCTTCAAGTGCAACAGTGCCGTGTGGCGTGCATTGAGGACCATTAATCCTGCCAAAGAGAAAAATCCTTGGATGGATGAGATTCACGACTTTCCTGTTCATGTGCCTAAAGTGGCAACCATTGGTTCCTCCTAG 1554 0.4575 MADQTRDSGTVSVQPSPERRKLPNFLLSVRLKYVKLGYHYVISNAMYLLLIPFIGVASAHLSTFSYQDVAQLWENLKFNLVSVTLCSSLIVFLVTFYFMSRPRGVYLVDFACYKPEPDCTCTRETFMDRSAKTGVFSEENLAFQKKILERSGLGQKTYLPPAILSLPPNPCMAEARKEAEQVMFGAIDQLLAKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAVLLSNRSSDRRRAKYQLIHTVRTHKGADDKCYGCVFQEEDEKKTIGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHDFPVHVPKVATIGSS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1723 517 CDD CHS_like 87 482 - -
Vra8g1723 517 Pfam FAE1/Type III polyketide synthase-like protein 97 386 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra8g1723 517 Gene3D - 117 484 IPR016039 GO:0016746
Vra8g1723 517 SUPERFAMILY Thiolase-like 290 486 IPR016039 GO:0016746
Vra8g1723 517 SUPERFAMILY Thiolase-like 91 309 IPR016039 GO:0016746
Vra8g1723 517 PANTHER 3-KETOACYL-COA SYNTHASE 19 513 - -
Vra8g1723 517 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 517 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra8g1723 517 PANTHER 3-KETOACYL-COA SYNTHASE 19 513 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra8g1723 517 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 403 483 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1723 Vra-Chr8 34420941 34423330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1723 20 514 Miscellaneous Gene Families AT2G26640 77.172 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1723 K15397 - gmx:100782027 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1723 8 34420941 34423330 Vra8g1723 8 34420941 34423330 ECH