Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1706 ATGTTCTACCACCTCAAAACAGTATGCCTCGTATGTTTCCTTTTACTATCCTTTGAAGTTTCACTGTGGTCATGTGCTTCACTCCCAAACTTGGCTTCCTGTTTGCTTAATCACAACATCAAAAACTTTACCACGCTCCCTTATAAAGAACACGACCAATCCTCTTCCTATAATTACTTCAAAATTCTTAATTTTTCCATCCAAAACCTTCGGTTCGCAGAACCCGTGATTCCTAAGCCAATGGCCATTGTATTGCCGGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGGATGCAGTAGAGAGAGTTCTATGGAAATCAGAGTAAGATGTGGCGGACACAGCTATGAAGGGACTTCGTATGTGGCTGATGAAGGCACTCCTTTTGTGATCATTGACATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACGTTGGGAGAGACTTATTATGCAATATCTGAAGCAAGCAACGAGCATGGATTCTCAGCTGGGTCATGTCCAACTGTTGGCGTCGGAGGACACATTGGAGGTGGTGGTTTTGGGATGCTGTCTAGAAAATATGGACTTGCAGCGGACAACGTGGTGGATGCCCTACTTGTTGATGCTGATCAAAATTTGTTGGACCGTGAAACCATGGGAGAAGATGTGTTCTGGGCTATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATCTATGCCTGGAAAATCCAGTTGCTGAAAGTGCCAAAGGTTGTAACCAGTTTCACCGTATCAAGAACAGGCACAAAAAGTGATGTTGCCAATCTGGTGCACAAATGGCAATATGTGGCACCAAACTTGGAAGATGACTACTATCTGTCATGCTTTGTTGGAGCTGGTTTGCCGCAAGCTAAAACCAAAGGGTTATCAGTAACACTCAATGGTTTCTATCTTGGTCCTAGAAGCAGTGCTGTATCCATTCTAAAGGAGACTTTTCCGGAGTTGGGTGTTACAGAAGAAGAATGCATAGAAATGAGTTGGATTGAGTCTATTGTTTTCTTCTCTGGCCTAAGTGATGGAGCTTCGGTGTCTGACTTGAAGAACAGGTATCTGCAAGAAAAAGAATATTTCAAGGCGAAATCAGATTATGTAAGAAAGCACGTTCCTCTTGTAGGGATAGAAACTGCACTAGACATCCTTGAAAAGGAGGCAAAGGGATATGTTATTCTGGATGCTTATGGTGGAAAGATGCATAATATAAGCAATGATGCAATTGCTTTTCCCCACAGAAGAGGAAACCTGTTTACAATACAGTACCTGATATATTGGAAAGAAGGTGAGAATGAGAAAAGCAGAGATTATGTAGATTGGATAAGAGGATTCTATGATGCTATGACTCCCTTTGTTTCATGGGGTCCAAGAGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTGAGGAAGATGATAAATGTGAAAGATGGTGTGGAAAATGCAAGAGATTGGGGTGAAAAGTACTTCTTGAGTAACTACGACAGATTGGTGAGAGCCAAGACCATGATTGATCCTAACAACGTTTTCACCAATGAACAGGGCATTCCTCCTATGTCGTCAAAGCACGCAGCAAACAAATGA 1629 0.4266 MFYHLKTVCLVCFLLLSFEVSLWSCASLPNLASCLLNHNIKNFTTLPYKEHDQSSSYNYFKILNFSIQNLRFAEPVIPKPMAIVLPESLEQLQKSVGCSRESSMEIRVRCGGHSYEGTSYVADEGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISEASNEHGFSAGSCPTVGVGGHIGGGGFGMLSRKYGLAADNVVDALLVDADQNLLDRETMGEDVFWAIRGGGGGLWGIIYAWKIQLLKVPKVVTSFTVSRTGTKSDVANLVHKWQYVAPNLEDDYYLSCFVGAGLPQAKTKGLSVTLNGFYLGPRSSAVSILKETFPELGVTEEECIEMSWIESIVFFSGLSDGASVSDLKNRYLQEKEYFKAKSDYVRKHVPLVGIETALDILEKEAKGYVILDAYGGKMHNISNDAIAFPHRRGNLFTIQYLIYWKEGENEKSRDYVDWIRGFYDAMTPFVSWGPRAAYINYMDFDLGVRKMINVKDGVENARDWGEKYFLSNYDRLVRAKTMIDPNNVFTNEQGIPPMSSKHAANK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1706 542 Pfam FAD binding domain 80 217 IPR006094 GO:0050660
Vra8g1706 542 Gene3D - 141 533 IPR016169 -
Vra8g1706 542 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Vra8g1706 542 Gene3D - 255 469 - -
Vra8g1706 542 PANTHER OS08G0158400 PROTEIN 23 538 - -
Vra8g1706 542 SUPERFAMILY FAD-binding/transporter-associated domain-like 69 253 IPR036318 GO:0050660
Vra8g1706 542 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 23 538 - -
Vra8g1706 542 Pfam Berberine and berberine like 473 532 IPR012951 GO:0016491|GO:0050660
Vra8g1706 542 Gene3D - 30 136 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1706 Vra-Chr8 34214401 34217647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1706 30 532 Miscellaneous Gene Families AT1G30760 42.406 9.05e-132 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1706 - - vun:114190730 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1706 8 34214401 34217647 Vra8g1706 8 34214401 34217647 ECH