Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1407 ATGGGGACAGAAAACCCTGGTCGATCTTCCTTTCTTTCTAGACCACCCTTTGATGCAGCACAGGGTATGGCATCTTTTTCGTCAACTGCTACCATGGTTGAGTCAGAGCCTCCTTTTTTCAGACCCACTCCTCCTGCTCCACCCTTGGCATCCACTCCATTTTCATTATCTGCGCCACCGGGCCATTTTAATGGCCCCTCAGTGCCTCCTCCTCCTCCTTCCAATTCCCCACCTGCTGCTGGACCTTTCCCGCGTTTTCCGATGACACAGTTCCCCTCAAATACTAAAGCACCTCCCCTGTTTCCTCCACCCATGGGACAACCAACATTTCAACCTTCTGCGGATCAAACTCAATCTTTTCCGGCTTCTCTTCCGCCTCAGCCGCACACTCCTTTTGTTTCAATGGGGTCTGCTCCTCCTGCACTTCCAGGATCAACTGTTCCTCCTCCTGCGTTTCAGCCATCTTTTCCTGGATATCCGCAGAAACAGGCTGGCGCAGAAATGCAAGCTTCCCCTGTGCATTCCTCTAACCCTACAAATCAAGGAAATTATGGGTCTGTCCCTGCACCACCTTTGCCTTTTCAACCTCATCAAGGAGTTCATGTTTCACAGCCCCCAATGGCTGCTTTGTCAAGCGTCCAGCCCATGCAACAACCGGGATCTGGACAGCCTACAGTTTCCATTAATGGCTTGGCAGAAGACTTCAATTCGCTGTCAATTCAAACTCGTCCTGGACTCATGGAGCCGTCCATTGATGCTAAAGAATTGCCAAGGCCATTGGAAGGTGATGAGGAGCCAAAGTCTTTAGCTGATATGTATCCCATGAACTGCAATCCTAGATATCTACGACTAACGACCAGTGGAATACCTGACTCCCAGTCCTTAATTTCAAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCGTTTGCAGAGCCTCCTGATGGGGAAGAGGTGCCCATAGTTAATTTTGCTGCAACTGGTGTCGTACGCTGCAGGAGATGCCGCACATATATAAATCCCTATGTCAAATTTACTGAAGGGGGAAGAAAGTTCCGGTGCAACGCCTGCTCCTTGCTTAATGACGTTCCTAGTGAATATTATGCACAACTAGATGCCACTGGCAGAAGAGTTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACCGTAGAATTTGTTGCCCCAGCAGAATATATGGTGCGGCCTCCTATGCCTCCGGTATATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGCGGAATGATTGAGGTTGTGGCCCAAACAATCAGGTCATGTTTAGATGAGCTCCCTGGCTATCCACGAACACAAATAGGGTTTGCAACTTTTGACAGTACAATACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAAATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCAGATGATCTTCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAACTTTTCTTGATGGTCTACCATCCATGTTCCAGGACAATGTGAATCTGGAATCTGCTTTTGGTCCTTCTCTGAAGGCTGCCTTTTTGATTATGAGTCAACTTGGAGGGAAATTGTTAGTTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCGGTTGAAACTACGTGGAGATGATTCTAAAGTCTATGGCACAGATAAAGAACACCTGTTAAGACTGCCAGAAGATCCCTTTTACAAGCAAATGGCTGCTGAGTTTTCTAAATACCAAATCTCAATAAACATGTATGCATTCAGTGATAAGTACACCGACATCGCATCCCTAGGAACTCTGGCAAAGTATACTGCTGGTCAACTCTATTACTATCCAGCTTTCCAATCAGTCATTCACGGGGAGAAACTAAGAAATGAGCTAAGGAGAGACCTTACCAGAGAAACTGGCTGGGAAGCGGTATTGCGAATTAGATGCGGTAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAAATTTGTTAGCACTTCCAGCCGTGGATAGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAAACATCACTGACAGATCAGACAATGTATTTCCAAGTTGCATTGTTGTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACATACAGCAGCAGCTCCAGTAGTTAAAGACTTGGTGGAGATGTATCGCTTGGCTGATACTGGTGCAATTTTATCTCTGTTTAGTAGGCTGGCAATTGAGAAAACATTATCCCATAAACTTGAAGATGCCCGGCGTGCTGTACATTTAGGAATTGTGAAAGGCCTCCGAGATTATCGAAATATCTATGCTGGGCAACAGCGGTTGGTGAATAGGATGATATATCCTGAGTCATTAAAGTTCCTACCCTTGTATGGTTTAGCTCTTTGTAGATCAGCACCTCTCCGTGGTGGATATGGGGATGTTTCACTGGATGAACGGTGTGCAGCTGGACACACAATGATGACCCTAACAGTAAAAAGGATGTTGAAACTTCTCTACCCTAGTTTGCATCGACTTGATGAATATCTTCTAAATGCTGATGATTTGAAAAGCATTGATAGAAGGTCACCTTTGACTAGGGAGAGCTTGGATTCTAGGGGCCTTTATATATATGACGATGGCTTCCAGTTCATTTTATGGTTTGGTAGAGTGATTTCACCTGACATAGCTAAGAACTTACTTGGGTCTAACTTTGCAGCTGAGTTATCAAAGGTTACTCTAAATGAGAATGAGAATGATACTGAAATGTCCCGGAGGCTGATAAAGGTACTTGAGAAGCTCAGAAGTACTGACCGTGCATATTACCAGTTGTGCCGCCTTGTGAGGCAAGGTGAACACCCCAGAGAAGGATTCCTTCTTCTTTCAAACCTGTTTGAGGACCAGCTGGGTGCTAATAATGGATATGCTGATTGGATGATACAGATTTCCAGACAAGTGCAACAAACATAA 2994 0.4489 MGTENPGRSSFLSRPPFDAAQGMASFSSTATMVESEPPFFRPTPPAPPLASTPFSLSAPPGHFNGPSVPPPPPSNSPPAAGPFPRFPMTQFPSNTKAPPLFPPPMGQPTFQPSADQTQSFPASLPPQPHTPFVSMGSAPPALPGSTVPPPAFQPSFPGYPQKQAGAEMQASPVHSSNPTNQGNYGSVPAPPLPFQPHQGVHVSQPPMAALSSVQPMQQPGSGQPTVSINGLAEDFNSLSIQTRPGLMEPSIDAKELPRPLEGDEEPKSLADMYPMNCNPRYLRLTTSGIPDSQSLISRWHLPLGAVVCPFAEPPDGEEVPIVNFAATGVVRCRRCRTYINPYVKFTEGGRKFRCNACSLLNDVPSEYYAQLDATGRRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIRSCLDELPGYPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDGLPSMFQDNVNLESAFGPSLKAAFLIMSQLGGKLLVFQNTLPSLGVGRLKLRGDDSKVYGTDKEHLLRLPEDPFYKQMAAEFSKYQISINMYAFSDKYTDIASLGTLAKYTAGQLYYYPAFQSVIHGEKLRNELRRDLTRETGWEAVLRIRCGKGVRFTTYHGNFMLRSTNLLALPAVDSDKAFAMQLSLEETSLTDQTMYFQVALLYTASCGERRIRVHTAAAPVVKDLVEMYRLADTGAILSLFSRLAIEKTLSHKLEDARRAVHLGIVKGLRDYRNIYAGQQRLVNRMIYPESLKFLPLYGLALCRSAPLRGGYGDVSLDERCAAGHTMMTLTVKRMLKLLYPSLHRLDEYLLNADDLKSIDRRSPLTRESLDSRGLYIYDDGFQFILWFGRVISPDIAKNLLGSNFAAELSKVTLNENENDTEMSRRLIKVLEKLRSTDRAYYQLCRLVRQGEHPREGFLLLSNLFEDQLGANNGYADWMIQISRQVQQT* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1407 997 Gene3D von Willebrand factor, type A domain 406 643 IPR036465 -
Vra8g1407 997 Pfam Sec23/Sec24 zinc finger 330 367 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vra8g1407 997 SUPERFAMILY Zn-finger domain of Sec23/24 320 403 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vra8g1407 997 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 859 996 IPR036180 -
Vra8g1407 997 Gene3D - 277 729 - -
Vra8g1407 997 PANTHER OS04G0129500 PROTEIN 37 996 - -
Vra8g1407 997 Gene3D - 275 388 - -
Vra8g1407 997 Pfam Sec23/Sec24 beta-sandwich domain 646 729 IPR012990 -
Vra8g1407 997 Pfam Sec23/Sec24 helical domain 741 844 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vra8g1407 997 MobiDBLite consensus disorder prediction 38 54 - -
Vra8g1407 997 MobiDBLite consensus disorder prediction 1 186 - -
Vra8g1407 997 SUPERFAMILY beta-sandwich domain of Sec23/24 166 739 - -
Vra8g1407 997 Gene3D Sec23/Sec24 helical domain 730 994 - -
Vra8g1407 997 Gene3D Severin 849 975 IPR029006 -
Vra8g1407 997 SUPERFAMILY vWA-like 404 644 IPR036465 -
Vra8g1407 997 PANTHER SEC24-RELATED PROTEIN 37 996 - -
Vra8g1407 997 MobiDBLite consensus disorder prediction 142 156 - -
Vra8g1407 997 SUPERFAMILY Helical domain of Sec23/24 741 848 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vra8g1407 997 Pfam Sec23/Sec24 trunk domain 404 640 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vra8g1407 997 MobiDBLite consensus disorder prediction 168 186 - -
Vra8g1407 997 MobiDBLite consensus disorder prediction 63 85 - -
Vra8g1407 997 CDD Sec24-like 404 645 IPR041742 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1407 Vra-Chr8 30928729 30940065 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1407 K14007 - gmx:100791083 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0865 3 8765741 8775797 Vra8g1407 8 30928729 30940065 PCT