Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1396 ATGCTGCAGTGCATATTTCTCCTCTCAGATGCCGGAGAGGTAGTGCTAGAGAAACAGCTTTCGGGGCACTGCGTCGATCGCTCCATTTGTGCCTGGTTCTGGGAACAAGCCGTTTCGTTTGGCGACTCCTTCAAGCATCAACCAGTGATCACCTCTCACTCGCATTACATTTTCCAAGTTTTTCGCGATGGAATCACTTTTTTGGGGTGCACGCAAATTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGCCGCTGATGTTCTCAATGATTATTTTGGGGCCTTAAACGAAGACATAATTAAAGACAACTTTGTCATTGTGTACGAGTTGTTGGATGAGATGATAGACAACGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAGATTATCAATCCGCCAAATGTGGTTAACAAAGCTTTGAGTATTGTGACTGGTAGCAATTCAAATGTGAGTGATACCCTTCCGAGGGCTACTGCATCTTGTATTCCCTGGAGAATAGCAGAGCCAAAGTACTCCAACAATGAAGTATATGTTGACCTTGTTGAAGAAATGGATGCGATTATTAACAGGGTAAGAAAGTTGAAGAGCACCCCAATATATGTAAAGCCGCAGTTAATATCTGATGGTGGGACATGCCGTCTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATCGACTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTGTCAGCTGATCTGACTTCAAATCATGGAACAGTGAACATCCTTGCTAAAAAGACATGCATATGGTCCATTGGTCGGATTCCAAAAGATAAAGCCCCTTCCATGTCTGGATTATTGGTGATTGAAACTGGTTTGGAGCGTCTTCATGTCTTCCCCTCATTTCAAGTGGGTTTTAGGATTATGGGTGTCGCCTTCTCTGGTCTGCAAATAGATAAACTGGATCTGAAGAATGCACCATACCGATTTTACAAAGGTTTTAGAGCTCTTACTCGGGCAGGTCAATTTGATGTAAGATCATAA 1038 0.4335 MLQCIFLLSDAGEVVLEKQLSGHCVDRSICAWFWEQAVSFGDSFKHQPVITSHSHYIFQVFRDGITFLGCTQIEMPPLMAIEFLCRAADVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSILREIINPPNVVNKALSIVTGSNSNVSDTLPRATASCIPWRIAEPKYSNNEVYVDLVEEMDAIINRVRKLKSTPIYVKPQLISDGGTCRLSVLVGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKKTCIWSIGRIPKDKAPSMSGLLVIETGLERLHVFPSFQVGFRIMGVAFSGLQIDKLDLKNAPYRFYKGFRALTRAGQFDVRS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1396 345 PANTHER CARMINE, ISOFORM A 7 195 - -
Vra8g1396 345 PANTHER CARMINE, ISOFORM A 196 344 - -
Vra8g1396 345 Gene3D - 1 142 - -
Vra8g1396 345 PANTHER AP COMPLEX SUBUNIT MU 196 344 - -
Vra8g1396 345 PANTHER AP COMPLEX SUBUNIT MU 7 195 - -
Vra8g1396 345 Gene3D Mu homology domain, subdomain B 202 308 - -
Vra8g1396 345 ProSiteProfiles Mu homology domain (MHD) profile. 103 344 IPR028565 -
Vra8g1396 345 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 344 IPR036168 -
Vra8g1396 345 Pfam Adaptor complexes medium subunit family 197 344 IPR028565 -
Vra8g1396 345 PIRSF AP_complex_mu 195 345 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra8g1396 345 PIRSF AP_complex_mu 1 201 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra8g1396 345 CDD AP3_Mu_N 3 142 - -
Vra8g1396 345 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra8g1396 345 PRINTS Clathrin coat assembly protein signature 169 197 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra8g1396 345 SUPERFAMILY SNARE-like 1 143 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1396 Vra-Chr8 30860785 30863411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1396 K12398 - twl:120008645 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0874 3 8853210 8856540 Vra8g1396 8 30860785 30863411 PCT