Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3564 ATGTCCGGGGCAGGCCAAGCCATAGACATGGAGAAGGTGGGGTTTTCGAAAGCCAAAGCCGATCATGGCCGTGGCAAGAAAACGGGCCCGGTTTCGATGGATCACGTGCTTCTTGCCTTGCGTGAGACCAAAGACGAGAGGGATCTTCGAATTCGGAGTCTCTTCAATTTCTTCGATGCTGCCAATGATGGGTACTTGGACTATGCTCACATTGAGGCTGGTTTGTCTGCCCTGCAGATTCCCCCTGAGTATAAGTATGCCAAGGAGCTTTTCAAGGTGTGTGATGCTGATAGGGATGGTAGGATTGATTACCATGATTTCAGGCGTTACATGGATGACAAGGAGTTGGAGCTTTATCGCATATTTCAGGCAATTGATGTGGAGCACAATGGCTGCATTCTCCCCGAAGAGCTTTGGGATGCACTTGTCAGGGCTGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAACGGAATTATCACTTTTGAAGAGTGGAGAGATTTTCTTCTACTTTATCCTCATGAAGCAACTATTGAAAATATATATCAGCATTGGGAGAGGATGTGCCTTGTTGACATTGGGGAACAAGCTGTCATTCCTGAAGGCATCAGCAAACATGTGCACAGGAGCAGATATTTTATTGCTGGGGCAATAGCAGGAGCTGCTTCTCGTACAGCAACTGCTCCTCTTGATCGTTTAAAGGTGGTCTTACAAGTTCAGACTGGAAGAGCTGCTATTATGCCGGCAGTGAAGATGATATGGCAACGAGATGGTTTATTAGGGTTTTTCCGAGGTAATGGATTGAATGTGGTCAAGGTAGCTCCAGAGAGTGCCATCAAGTTCTATGCTTATGAAATGCTGAAAAATGTAATTGGAGATGCTCAACAGGGAAAGTCAGATATCGGTACTGCAGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCAGTTGCACAGATTGCTATCTATCCAATGGATCTTGTCAAAACTAGGTTACAGACTTGTGCTTCTGATGGTGGAAAGGTTCCTAAACTTAGTACTCTTACAAAGGATATATGGGTCCATGAAGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCATCTCTTCTGGGTATAATTCCCTATGCAGGGATTGATCTCACTGTATATGACACCTTGAAAGATATATCTAAGAAATATATTCTTCATGACAGTGATCCTGGTCCTCTAGTACAACTTGGATGTGGGACGATTTCAGGTGCTCTTGGAGCCACTTGTGTGTATCCGCTGCAGGTTATTAGGACAAGGCTGCAGGCACAACCTATCAACAACACCGGTGCTTACACGGGAATGTTTGATGCATTCCGGAAAACTTTTAGGGATGAAAGCTTTAGAGGTTTCTACAAGGGGCTCATTCCTAATCTCCTTAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTTTATGAATACATGAAGAAGAATCTAGATCTTGAGTAG 1503 0.4478 MSGAGQAIDMEKVGFSKAKADHGRGKKTGPVSMDHVLLALRETKDERDLRIRSLFNFFDAANDGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYHDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVRAGIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWERMCLVDIGEQAVIPEGISKHVHRSRYFIAGAIAGAASRTATAPLDRLKVVLQVQTGRAAIMPAVKMIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDAQQGKSDIGTAGRLFAGGMAGAVAQIAIYPMDLVKTRLQTCASDGGKVPKLSTLTKDIWVHEGPRAFYRGLVPSLLGIIPYAGIDLTVYDTLKDISKKYILHDSDPGPLVQLGCGTISGALGATCVYPLQVIRTRLQAQPINNTGAYTGMFDAFRKTFRDESFRGFYKGLIPNLLKVVPAASITYMVYEYMKKNLDLE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3564 500 Pfam Mitochondrial carrier protein 409 497 IPR018108 -
Vra7g3564 500 Pfam Mitochondrial carrier protein 309 400 IPR018108 -
Vra7g3564 500 Pfam Mitochondrial carrier protein 219 301 IPR018108 -
Vra7g3564 500 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Vra7g3564 500 PANTHER SOLUTE CARRIER FAMILY 25 59 497 - -
Vra7g3564 500 SUPERFAMILY EF-hand 36 215 IPR011992 -
Vra7g3564 500 PRINTS Mitochondrial carrier protein signature 221 234 IPR002067 GO:0055085
Vra7g3564 500 PRINTS Mitochondrial carrier protein signature 234 248 IPR002067 GO:0055085
Vra7g3564 500 PRINTS Mitochondrial carrier protein signature 274 294 IPR002067 GO:0055085
Vra7g3564 500 PRINTS Mitochondrial carrier protein signature 325 343 IPR002067 GO:0055085
Vra7g3564 500 PRINTS Mitochondrial carrier protein signature 370 388 IPR002067 GO:0055085
Vra7g3564 500 PRINTS Mitochondrial carrier protein signature 417 439 IPR002067 GO:0055085
Vra7g3564 500 Pfam EF-hand domain pair 88 113 IPR002048 GO:0005509
Vra7g3564 500 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Vra7g3564 500 SMART efh_1 117 145 IPR002048 GO:0005509
Vra7g3564 500 SMART efh_1 153 181 IPR002048 GO:0005509
Vra7g3564 500 SMART efh_1 50 78 IPR002048 GO:0005509
Vra7g3564 500 SMART efh_1 86 114 IPR002048 GO:0005509
Vra7g3564 500 Gene3D - 129 204 - -
Vra7g3564 500 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Vra7g3564 500 Gene3D - 16 117 - -
Vra7g3564 500 ProSiteProfiles EF-hand calcium-binding domain profile. 118 148 IPR002048 GO:0005509
Vra7g3564 500 Gene3D Mitochondrial carrier domain 212 498 IPR023395 -
Vra7g3564 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 310 397 IPR018108 -
Vra7g3564 500 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Vra7g3564 500 Pfam EF-hand domain pair 117 176 IPR002048 GO:0005509
Vra7g3564 500 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Vra7g3564 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 408 496 IPR018108 -
Vra7g3564 500 SUPERFAMILY Mitochondrial carrier 215 493 IPR023395 -
Vra7g3564 500 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 59 497 - -
Vra7g3564 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 299 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3564 Vra-Chr7 54972141 54975527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3564 26 500 EF-hand Containing Proteins AT5G51050 76.939 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3564 K14684 - gmx:100791305 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3564 7 54972141 54975527 Vra7g3564 7 54972141 54975527 ECH