Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3557 ATGGAAGCCATGAACGTGACGACGAGGGTTAGAGAAGAAGTGCGTCTTGAAGATGATAGCACTGAGACTGAACTCCACAAAATCCGTCTCTTGAGGGCTATGGTTGAAGCACGAGATCCCTCTGCTAAGGAAGAAGATGATTTTACGATTAGAAGATTCCTACGTGCTCGTGATTTAGATTTGGAGAAGGCTTCTACAATGTTCCTCAAGTACTTGAAATGGAGACATTCGTTTCCAAATGGTTCTGTATCCGTATCAGAAGTTCGCAATGAACTTGCTCAAGAGAAGGTGTTCATGCAAGGAAAGGACAAGATAGGTCGACCTATAGCTGTTGTAGTCGGTAGAAAACATTTTCAGAACAAAGATGGTGGAGATGAATTCAAACGGTTTGTCGTCTACGTGTTTGACAAAATATGTGCAAGTATTCCACCTGGTCAAGAAAAGTTTGCTGCTATAGCTGAACTTAAGGGATGGGGATACTCAAACAGTGACGTTCGTGGATACCTTGGTGCTCTATCAGTTTTGCAGGATTACTACCCGGAAAGATTGGGGAAGTTGTTTATTGTCAATGCACCATACATATTTATGAAAGTGTGGCAAATTATTTATCCTTTCATTGACAACAAAACCAAGAAGAAGATAGTATTTGTGGATAAAAACAAGGTGAAATCAACACTGCTAGAAGACATTGATGAAAGTAATATACCAGAGATATTCGGTGGGCCACTGCCATTAGTCCGACTTCAGGATATCTAA 756 0.4074 MEAMNVTTRVREEVRLEDDSTETELHKIRLLRAMVEARDPSAKEEDDFTIRRFLRARDLDLEKASTMFLKYLKWRHSFPNGSVSVSEVRNELAQEKVFMQGKDKIGRPIAVVVGRKHFQNKDGGDEFKRFVVYVFDKICASIPPGQEKFAAIAELKGWGYSNSDVRGYLGALSVLQDYYPERLGKLFIVNAPYIFMKVWQIIYPFIDNKTKKKIVFVDKNKVKSTLLEDIDESNIPEIFGGPLPLVRLQDI* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3557 251 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 85 247 IPR001251 -
Vra7g3557 251 SUPERFAMILY CRAL/TRIO domain 87 244 IPR036865 -
Vra7g3557 251 PANTHER OS03G0850700 PROTEIN 10 250 - -
Vra7g3557 251 SMART sec14_4 91 244 IPR001251 -
Vra7g3557 251 Pfam CRAL/TRIO domain 95 241 IPR001251 -
Vra7g3557 251 SMART CRAL_TRIO_N_2 46 71 IPR011074 -
Vra7g3557 251 SUPERFAMILY CRAL/TRIO N-terminal domain 18 80 IPR036273 -
Vra7g3557 251 CDD SEC14 97 241 IPR001251 -
Vra7g3557 251 Gene3D - 17 248 IPR036865 -
Vra7g3557 251 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 10 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3557 Vra-Chr7 54918767 54946891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3557 52 237 Acyl Lipid Metabolism Gene Families AT1G55840 28.708 3.03e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3557 - - gmx:548015 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3557 7 54918767 54946891 Vra7g3557 7 54918767 54946891 ECH