Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3555 ATGGGCAACTGCTGCTCCGACGTCGCCGGCGGCAAAACGGCCGTCGGCGGCACCGCCTCCGACCACCTCAACTCGGCCAACGGTCCCAACGAGGCCGTTGATAACTTCCTCAGGTCTCGCGGTTATAACGGTCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATATAGTCTCTAAGAGTGATCCAATGCTGGTTCTTTATGAAAGAGGAAAAAATGGAGCACTGAAGGAACTTGGCCGGACAGAAGTAGTTCTGAATTCATTAAATCCTAAATGGATTACTAAACACACGCTCACTTATCATTTTGAGACTGTTCAGGAATTAGTGTTTCGTGTGTATGATGTTGATACTCAATTTCACAATGCAAGTGTAAAGATGCTTAAGTTAGAAGAGCAGGAACATCTAGGTGAGGCAACCTGTGCATTATCTCAGATAATTACAAAGTTTGATCGGTCAATGACATTAGATTTACACTCAGAAGATTTTACCAGATCTACCCAGTCTCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAGGAATGTGTTAGCTCAAAGACAACAGTAGAGATGACACTCAGGTGTTGTGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGTATGTGATCCCTTTCTATTGATTTCAAAAGTTGTGGAAGGTGGTAGTCATATTCCAATTTGCAAAACCGAAGTTATAAAGAATGATCTCAACCCAATATGGAAGCCAGTCTTCTTGAATATTCAACAAATAGGAAGCAAGGAAAATCCTTTGATAATGGAGTGCTATAATTTTAACAGCAATGGCAAACATGATTTGATGGGGAAAGTGCAATTATCTTTGATGGAGCTGGAGAAGCTTTATTCCAGTGGCCAAGGAGGAAATTTATACTTGTCTGCTGCTGCTGGTCATAATTCTCCTAACAAGATGTTAAAGGGCCGATTATACGTGGAAAAATATGCTGAAAGTGTTCAATATTCTTTCTTGGATTACTTGGCCGGGGGGTTTGAATTGAACTTCATGGTGGCTGTTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATCGATCCTTCAGGACGCCCAAATGCATACCAGAGGGCAATTTCAGAGGTCGGGGAGGTCTTACAGTACTATGATTCAGACAAGCGATTTCCGACATGGGGATTTGGAGCACGACCAATTGACGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCATCCAAGGAATCATGAAGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCAATGATTGCCAGCCAATCTGTAGCAAATGGCGGAAGAAAGTACTTTGTCTTGTTAATCATCACCGATGGAGTAGTGACAGATCTTCAAGAAACAAAAGATGCTCTCGTTAAAGCATCGGATCTACCATTATCAATCCTTATTGTTGGTGTTGGAGGAGCCGATTTCAAAGAAATGGAGATTTTAGATGCGGACAAAGGAGAGAAGCTTGAAAATTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCTGAATTACCTACTCAATTTTTAACTTACGTGCGGAGCAGAAGTATCCAACCGAGTGTCTAG 1746 0.4267 MGNCCSDVAGGKTAVGGTASDHLNSANGPNEAVDNFLRSRGYNGLFSQIELSFSASGLRDRDIVSKSDPMLVLYERGKNGALKELGRTEVVLNSLNPKWITKHTLTYHFETVQELVFRVYDVDTQFHNASVKMLKLEEQEHLGEATCALSQIITKFDRSMTLDLHSEDFTRSTQSQNCGKLLVHAEECVSSKTTVEMTLRCCDLEYRDLFSRSVCDPFLLISKVVEGGSHIPICKTEVIKNDLNPIWKPVFLNIQQIGSKENPLIMECYNFNSNGKHDLMGKVQLSLMELEKLYSSGQGGNLYLSAAAGHNSPNKMLKGRLYVEKYAESVQYSFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAISEVGEVLQYYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMKAYTSALLNVSLAGPTLFGPVISNAAMIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGEKLENSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYVRSRSIQPSV* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3555 581 SUPERFAMILY vWA-like 343 527 IPR036465 -
Vra7g3555 581 Pfam C2 domain 54 154 IPR000008 -
Vra7g3555 581 Pfam C2 domain 201 292 IPR000008 -
Vra7g3555 581 CDD C2A_Copine 47 166 - -
Vra7g3555 581 SMART VWA_4 343 540 IPR002035 -
Vra7g3555 581 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 292 IPR035892 -
Vra7g3555 581 Pfam Copine 364 579 IPR010734 -
Vra7g3555 581 PANTHER COPINE 1 580 IPR045052 GO:0005544
Vra7g3555 581 CDD vWA_copine_like 314 568 IPR010734 -
Vra7g3555 581 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 580 - -
Vra7g3555 581 Gene3D C2 domain 198 325 IPR035892 -
Vra7g3555 581 ProSiteProfiles C2 domain profile. 28 164 IPR000008 -
Vra7g3555 581 ProSiteProfiles VWFA domain profile. 345 564 IPR002035 -
Vra7g3555 581 CDD C2B_Copine 195 292 IPR037768 -
Vra7g3555 581 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 165 IPR035892 -
Vra7g3555 581 SMART C2_3c 48 161 IPR000008 -
Vra7g3555 581 SMART C2_3c 198 299 IPR000008 -
Vra7g3555 581 Gene3D C2 domain 52 197 IPR035892 -
Vra7g3555 581 ProSiteProfiles C2 domain profile. 177 304 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3555 Vra-Chr7 54891014 54900107 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3555 - - gmx:100807801 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3555 7 54891014 54900107 Vra7g3555 7 54891014 54900107 ECH