Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3554 ATGGGACTCCATCCCAGCCCAACGGAACACCACCAAAACGGCGTCGTCAGTAGCAGGCAAGAACACGAAGAGGCATTGCTGGCTCTCATCGAACACCGTACCCGCGAAGTCAAACGCCTCCGTAATTATATCTCTTATTACAAATCCCAGCTTGAGGAAGCAGAAAAGAGTTTGTTGGAATCTAAATCAAAACTGGCTCGTTTACGAGGTCTAACTGGTGCAAGTTCATCACATGTTGACACTCAGCAAGTGAAGATAGAACGTGAATCAAAAATCGGTTCTTTTCATAAAAGTGACGGTTCTTCCAAAAACCACCTTCAGTCTAAGTTACGCCTTGCTCGTGTGGGTTCAAAATTTTCGCATTCCGTACCGTTGCCACCTTCTCCTTCTGTTGCTTGGTCAACGGTAAAGTCTGATAAGACTCGAAGAATCTCCCATGAACAGGAAAACATTGAAGTCCAAGGCAGAGGGAGCAAAAGGAAGTTTTTTGAACAGAAAGAGACTACTGAGGAAGTGATTCCCTTGATATGTAAAAGTTCTTCACCAGAATCAGTGCTTTATCAAGCAAGCAATCACTTCTCTAGTCAACACAAGAGGAGAGTGCGATGTATTGCTGTGTGTCCTGTAAATGATCACCACTTTGTCACCAGTGCTTTGGATGGAGTGGTCAACTTGTGGGAAGTTCATTCATCACAATCAGTAGCTTGTCTTCTTAAAAGTACAAATTGTATATCCCCACAGCAGAGATGGCCGGAAGACATAGTTTGGCACCCAGACGGAAACAGCTTGCTTTCGGTATATAGTGCTGATGGTCGAGACTCTCAAATATCAGTTACGGACTTCAGTGCTGATGGGAGAGCAAACCATGTAAGTTTCTTAGAGGACAAACCTCACGTGACGGGTGTCATAAATAGCATTGCTTTTCTGCCTCGGGAGAATACCAGTTTTGTAACTGGAGGAACTGACCATGCTGTCGTATTGTGGCGTGAGAATGACCAGAACAAATGGAAGCCAGAGACATTACACAGGAATCTTCATTCTTCAGCCGTCATGGGAGTATCTGGTATGCAGCAGAGGTCAGTTGTGTTGTCTGTTGGCAAAGACAAGAGAATCTTGGGGTACGATGTTTGTGTCGGAAGAAAAGATTTCACGCAGCAAGTTGATAGTAAATGTTTGAGTGTTCTGCCAAATCCCCGTGACTTTAATCTATTCATGGTTCAAACTGGGACTCCTGAGAGACAGCTTCGATTATTTGACATCAGATCAAAAAGGTCAGAAGTTCATGGGTTTGGATGGAAGCAAGAAAGCAGCGAGTCTCAGTCAGCTCTGATAAATCAAGCTTGGTCCCCAAATGGAGTTTACATAACATCTGGTTCAGCCGATCCCATGATTCACATATTTGACATTAGATATAATGGTCACAAACCTTCCCAATCTATAGAAGCTCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCGCTCTCTTCCCTTACTCGTTTCCATATCATCTGATCTCAACATTGGGTTACACAAAATTGTCTAG 1545 0.4382 MGLHPSPTEHHQNGVVSSRQEHEEALLALIEHRTREVKRLRNYISYYKSQLEEAEKSLLESKSKLARLRGLTGASSSHVDTQQVKIERESKIGSFHKSDGSSKNHLQSKLRLARVGSKFSHSVPLPPSPSVAWSTVKSDKTRRISHEQENIEVQGRGSKRKFFEQKETTEEVIPLICKSSSPESVLYQASNHFSSQHKRRVRCIAVCPVNDHHFVTSALDGVVNLWEVHSSQSVACLLKSTNCISPQQRWPEDIVWHPDGNSLLSVYSADGRDSQISVTDFSADGRANHVSFLEDKPHVTGVINSIAFLPRENTSFVTGGTDHAVVLWRENDQNKWKPETLHRNLHSSAVMGVSGMQQRSVVLSVGKDKRILGYDVCVGRKDFTQQVDSKCLSVLPNPRDFNLFMVQTGTPERQLRLFDIRSKRSEVHGFGWKQESSESQSALINQAWSPNGVYITSGSADPMIHIFDIRYNGHKPSQSIEAHQKRVFRAMWLRSLPLLVSISSDLNIGLHKIV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3554 514 Gene3D - 389 514 IPR015943 GO:0005515
Vra7g3554 514 Pfam WD domain, G-beta repeat 445 468 IPR001680 GO:0005515
Vra7g3554 514 Coils Coil 51 71 - -
Vra7g3554 514 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 513 - -
Vra7g3554 514 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g3554 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Vra7g3554 514 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 513 - -
Vra7g3554 514 Gene3D - 130 388 IPR015943 GO:0005515
Vra7g3554 514 SUPERFAMILY WD40 repeat-like 195 510 IPR036322 GO:0005515
Vra7g3554 514 SMART WD40_4 337 375 IPR001680 GO:0005515
Vra7g3554 514 SMART WD40_4 188 227 IPR001680 GO:0005515
Vra7g3554 514 SMART WD40_4 473 512 IPR001680 GO:0005515
Vra7g3554 514 SMART WD40_4 286 329 IPR001680 GO:0005515
Vra7g3554 514 SMART WD40_4 431 468 IPR001680 GO:0005515
Vra7g3554 514 SMART WD40_4 237 280 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3554 - - ccaj:109813667 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3554 7 54884701 54887840 Vra7g3554 7 54884701 54887840 ECH