Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3541 ATGGGTTTCAAGGCCATGGACCAAACTCCCTTGTTGTCCAAGATGGCTATTGGGGATGGACATGGCGAATCATCCCCATACTTTGATGGATGGAAGGCTTATGATCAAAACCCCTTTCATCCCACAGATAATCCTAACGGTGTTATGCAAATGGGTCTTGCTGAGAATCAGCTTACCTCTGATTTGGTTGAAGATTGGATACTGAACAACCCTGAAGCCTCCATTTGCACTCCAGAAGGAATAAATGATTTCAGGGCCATAGCTAACTTTCAGGATTATCATGGTCTGGCCGAGTTCAGAAATGCTGTGGCTAAATTTATGGCTAGAACAAGGGGAAACAGAATCACGTTTGACCCTGACCGTATTGTCATGAGCGGTGGAGCCACCGGAGCACACGAAGTCACTGCCTTTTGTTTGGCAGATCCCGGCGAGGCATTCTTAGTGCCCATTCCCTATTATCCAGGCTTTGACCGGGATTTGAGGTGGAGAACAGGAGTTAAACTTGTTCCAGTTATGTGCGATAGCTCAAATAATTTCGTGTTGACAAAGGAAGCATTGGAAGATGCCTATGAGAAAGCAAGAGAGGATAACATCAGAGTAAAGGGTTTACTGATCACCAATCCATCAAATCCATTAGGCACAATCATGGACAGAAAGACACTGAGAACCGTGGTGAGCTTCATCAATGAGAAGCGTATCCACCTTGTATGTGATGAAATATATGCTGCAACAGTTTTCAGCCAACCCGGTTTCATAAGCATAGCTGAGATATTAGAGGATGAAACAGACATAGAGTGTGACCGCAACCTCGTACACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGCTTCAGAGTCGGCATCATATACTCTTACAATGATGCTGTGGTTAATTGTGCACGCAAAATGTCAAGCTTTGGATTGGTGTCAACACAGACTCAGTATCTTTTAGCATCGATGCTAAATGATGATGAGTTTGTGGAGAGGTTTCTGGCAGAGAGTGCAAAGAGGTTGGCTCAAAGGTTCAGGGTTTTCACTGGGGGGTTGGCCAAAGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTATTTGTGTGGATGGATTTAAGGCAACTTCTCAAAAAGCCAACTTTCGACTCTGAAACGGAGCTTTGGAAAGTTATCATTCATGAAGTTAAGATCAATGTTTCACCTGGCTATTCCTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAAATTGCTTTGCAACGAATCCGCAACTTTGTGCTTCAAAACAAGGAGGTCGTGGTGTCTAATAAGAAACATTGTTGGCACAGTAACTTGAGGCTGAGCCTCAAAACCAGAAGGTTTGATGATATCACCATGTCACCTCACTCTCCCCTACCTCAGTCACCTATGGTTAAAGCCACAAATTGA 1455 0.444 MGFKAMDQTPLLSKMAIGDGHGESSPYFDGWKAYDQNPFHPTDNPNGVMQMGLAENQLTSDLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLAEFRNAVAKFMARTRGNRITFDPDRIVMSGGATGAHEVTAFCLADPGEAFLVPIPYYPGFDRDLRWRTGVKLVPVMCDSSNNFVLTKEALEDAYEKAREDNIRVKGLLITNPSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVFSQPGFISIAEILEDETDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLASMLNDDEFVERFLAESAKRLAQRFRVFTGGLAKVGIKCLQSNAGLFVWMDLRQLLKKPTFDSETELWKVIIHEVKINVSPGYSFHCTEPGWFRVCYANMDDMAVQIALQRIRNFVLQNKEVVVSNKKHCWHSNLRLSLKTRRFDDITMSPHSPLPQSPMVKATN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3541 484 CDD AAT_like 89 432 - -
Vra7g3541 484 Gene3D - 71 325 IPR015421 GO:0003824
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Vra7g3541 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Vra7g3541 484 Pfam Aminotransferase class I and II 50 431 IPR004839 GO:0009058|GO:0030170
Vra7g3541 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vra7g3541 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 5 446 - -
Vra7g3541 484 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Vra7g3541 484 Coils Coil 183 203 - -
Vra7g3541 484 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 5 446 - -
Vra7g3541 484 SUPERFAMILY PLP-dependent transferases 21 435 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3541 Vra-Chr7 54736106 54738805 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3541 K20772 - gmx:100037458 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0261 11 1807922 1810433 Vra7g3541 7 54736106 54738805 PCT