Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3457 ATGGTTTTCATTCATGCAATGTTGAATGTTCTCGTTCCCCCTCTAAGCTTGGCTATTCTGGTGCTAATTTTACCACCATTTTTGTTATTCAAGATTCTCCGTTTCATCGTAAGATCAATTTTTAGAGAGAATGTAGCAGGAAAAGTGGTACTTATCACTGGAGCTTCCTCGGGCATAGGAGAGTACCTAGCATATGAGTATGCTAAAAGAGGGGCGCATCTAGCACTTGTTGCTAGAAGAGAAAATCTAATAAAAGAGGTTGCCAACAATGCCAAATTACTTGGATCCCCTGATGTGATCACTATTCCTGCTGATGTTTCAAGACCTCAAGATTGTCGACGATTTGTTGAGTCAACAATCAACCACTTTGGACGATTGGATCATTTGGTGAACAATGCCGGAATAAATGCTGTCAGCATGTTTGAGGACACCACTGATATCACAAACTTTGCACCAGTAATGGACATTAACTTCTGGGGTTCTGCATATAGCACTTACTTTTCAATCCCCCACCTCAGACAAAGCAAAGGAAAGATCGTAGCAGTAGCTTCTTATACTGGATGGATGCCTGTTCCGAGGATGAGTATCTACAATGCCAGCAAAGCAGCAGTGATCAGCCTATATGAGACTCTGAGAACTGAATTCGGAAGAGACGTAGGAATAACTATAGTCACTCCAGTGCTGATAGAGTCAGAAATGTCTCAAGGGAAGATCCTATCCAAGGATGGCAAGATGGTTTTTGATCAACAAATAAGAGATATGGAAGTTGGTGTGGTGCCCATAAAATCAGTGACAGAAGCTGCCAAAGCAATTGTGAATAGCGTTTGCCGTGGGGACTCGTACTTGACAGAACCAGCTTGGTTTACGACAATGTTCTATTGGCAGATGTTTTTCCCTCAAGTGTTAGGGTTTCTTAACCGCCGGTCACTGACTTCGGAGTCTGCGGAGGAGGATCCAGCTAGCAGCAAGAAGGTCATTGATATTAAACTCTTGAAGAAATATATAAATCCCAAGTCAGTGAGAAGTCCCAATATCAAACCCAACTAA 1047 0.4231 MVFIHAMLNVLVPPLSLAILVLILPPFLLFKILRFIVRSIFRENVAGKVVLITGASSGIGEYLAYEYAKRGAHLALVARRENLIKEVANNAKLLGSPDVITIPADVSRPQDCRRFVESTINHFGRLDHLVNNAGINAVSMFEDTTDITNFAPVMDINFWGSAYSTYFSIPHLRQSKGKIVAVASYTGWMPVPRMSIYNASKAAVISLYETLRTEFGRDVGITIVTPVLIESEMSQGKILSKDGKMVFDQQIRDMEVGVVPIKSVTEAAKAIVNSVCRGDSYLTEPAWFTTMFYWQMFFPQVLGFLNRRSLTSESAEEDPASSKKVIDIKLLKKYINPKSVRSPNIKPN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3457 348 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vra7g3457 348 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vra7g3457 348 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vra7g3457 348 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vra7g3457 348 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vra7g3457 348 PANTHER RETINOL DEHYDROGENASE-RELATED 1 340 - -
Vra7g3457 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 306 IPR036291 -
Vra7g3457 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vra7g3457 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vra7g3457 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vra7g3457 348 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vra7g3457 348 Gene3D - 35 316 - -
Vra7g3457 348 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 340 - -
Vra7g3457 348 Pfam short chain dehydrogenase 48 236 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3457 Vra-Chr7 53945471 53948479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3457 45 223 Acyl Lipid Metabolism Gene Families AT3G12800 32.292 3.84e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3457 K22418 - gmx:100787835 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3457 7 53945471 53948479 Vra7g3457 7 53945471 53948479 ECH