Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3449 ATGGTTGAGTTGTCGTTGAGTGAGCTCAGCCTTCACCAACAGAAGCACAGAACAAAAGATTACTGCACGAATAAAGTCAAAAGTCTGAATGGTTTTCACTCTGATCAATCTGTGAAGGAATCGAGGAAGGAAGGAAGGGTGAGGGTTAGGGTAAGGGTAAGGGTAAGGGTTGAGAAGGCACAGAAAAAGTCAATTCAAATGCCGGAAGAGGATTTGGTTGACATCAAGTTTAGGTTGTACGATGGCTCCGATATCGGACCCTTCAGGTACTCATCTGCCGCCACTGTCGATATGCTTAAGCAGAGGATTGTCTCCGATTGGCCCAAAGGTAAAACGATCGTGCCAAAGTCAGCTAACGAAGTGAAATTGATTAATTCTGGTCAAATCTTGGAAAACAACAAGACTGTTGGTCAATGTAAAGTACTATTTGGTGAGATTGCAGGAAGTATTATAATAATGCATGTTGTTGTACAGCCATCTCTCGCAAAAACTAAAGCTGAAAAGAAGGTGGATGATTCACCCAAGAAGGCTGTCTGTTCTTGTTCTATATTGTGA 555 0.4234 MVELSLSELSLHQQKHRTKDYCTNKVKSLNGFHSDQSVKESRKEGRVRVRVRVRVRVEKAQKKSIQMPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTIVPKSANEVKLINSGQILENNKTVGQCKVLFGEIAGSIIIMHVVVQPSLAKTKAEKKVDDSPKKAVCSCSIL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3449 184 Pfam Ubiquitin-2 like Rad60 SUMO-like 72 182 IPR039540 -
Vra7g3449 184 SUPERFAMILY Ubiquitin-like 67 163 IPR029071 -
Vra7g3449 184 Gene3D - 57 166 - -
Vra7g3449 184 CDD Ubl_MUBs_plant 72 159 - -
Vra7g3449 184 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 67 184 - -
Vra7g3449 184 ProSiteProfiles Ubiquitin domain profile. 73 141 IPR000626 GO:0005515
Vra7g3449 184 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 67 184 IPR040015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3449 Vra-Chr7 53836416 53840312 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3449 - - vra:106768304 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3449 7 53836416 53840312 Vra7g3449 7 53836416 53840312 ECH