Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3174 ATGGCTATGCTGCTGCTGCTGTTCTTCATGCTGCCACTCTCAATTTCTGCATCTGGGTCTGGGGATGCATTTATTGGTGTCAACGTTGGTCTAGATATAACTGACGTGCCAGGTCCAACAGAGATTGTTGCTCTTCTGAAGGCTCAAGGTATCCAACATGTGAGACTCTATGATGCTGACCGAGACTTACTTCGTGCACTTGCCAAGACAGGAATCCGTGTAACTGTTTCTGTTCCCAATGACCAGTTACTTGGCATTGGTCAGTCCAACGCGACAGCAGCAAACTGGGTTAATCGAAATGTCATAGCTCATATCCCTGCTACTAACATCACTGCCATATGTGTTGGATCTGAGGTTCTAACTACTCTCCCAAATGCAGCCCCTATTCTAGTCTCTGCCATAAATTTCATTCATTCTGCTCTGGTTGCGGCTAATCTAGATCAGCAAATTAAAGTCTCTAGTCCGCACTCTTCTTCTATCATCCTTGATTCTTTCCCTCCTTCCCAGGCATTTTTCAACCGTACATGGAATTCAGTCATGGTTCCCATGCTTAAATTTTTGCAATCAACAGGTTCATATCTTATGCTCAATGTGTATCCGTATTATGATTACCAGCAGGCCAATGATGCAATCCCACTAGATTATGCTTTATTCCGTCCCCTACCTCCAAATAAGGAAGCTGTTGATTCCAACACTCTGCTGCATTATACTAATGTTTTTGATGCAGTTGTTGATGCTGCTTATTTTGCAATGTCGGATTTGAACTTCACCGATATCCCTATTGTGGTGACTGAGTCAGGATGGCCCTCCAAAGGTGATTCATCTGAACCTGATGCAACTGTTGATAATGCCAACACTTACAACAGTAACTTGATCAGACACGTCCTTAACAATACGGGGACTCCTAAACATCCTGGAATTGCAGTTAGCACCTATATTTATGAGCTTTATAATGAAGACTTAAGATCCGGTCCATTCTCAGAAAAGAACTGGGGGCTATTTTATGCCAATGGAGAACCGGTGTATACCTTACACTTGACTGGTGCTGGTACTATTTTTGCAAATGATACAACAAACCAAACCTTCTGTGTCGCAAAGAGTAATGCTGACCCTAAGATGTTACAGGCAGCACTTGATTGGGCTTGTGGACCGGGAAAGGTGGATTGTTCCCCTTTGCTGCAGGGTCAAACATGTTATCAACCGGATAATGTAGTTTCACATTCTACGTATGCTTTCAATGCATACTATCAGAAGATGGATAAATCGCCGGGTAGTTGTGATTTCAAAGGCGTTGCATCTATCACTACCACAGACCCAAGTCACGGTTCTTGTATATTTCCTGGAAGTCATGGGAGAAAGGGAACCCGGACAAATGGAACATCACTGGCCCCATCTAATTCCACAAGTTCGGGATACTTGCTACAATGTTACTCCAACGGTGGATTTTTCACAAGCTCGTTGGGTCTGGTTGTTCTACTTTTATGTGCAGTTATGTAG 1497 0.4342 MAMLLLLFFMLPLSISASGSGDAFIGVNVGLDITDVPGPTEIVALLKAQGIQHVRLYDADRDLLRALAKTGIRVTVSVPNDQLLGIGQSNATAANWVNRNVIAHIPATNITAICVGSEVLTTLPNAAPILVSAINFIHSALVAANLDQQIKVSSPHSSSIILDSFPPSQAFFNRTWNSVMVPMLKFLQSTGSYLMLNVYPYYDYQQANDAIPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAVVDAAYFAMSDLNFTDIPIVVTESGWPSKGDSSEPDATVDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPFSEKNWGLFYANGEPVYTLHLTGAGTIFANDTTNQTFCVAKSNADPKMLQAALDWACGPGKVDCSPLLQGQTCYQPDNVVSHSTYAFNAYYQKMDKSPGSCDFKGVASITTTDPSHGSCIFPGSHGRKGTRTNGTSLAPSNSTSSGYLLQCYSNGGFFTSSLGLVVLLLCAVM* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3174 498 SMART X8_cls 361 446 IPR012946 -
Vra7g3174 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 488 IPR044965 GO:0004553|GO:0005975
Vra7g3174 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 6 488 - -
Vra7g3174 498 SUPERFAMILY (Trans)glycosidases 25 345 IPR017853 -
Vra7g3174 498 Gene3D Glycosidases 24 351 - -
Vra7g3174 498 Pfam Glycosyl hydrolases family 17 25 345 IPR000490 GO:0004553|GO:0005975
Vra7g3174 498 Pfam X8 domain 362 432 IPR012946 -
Vra7g3174 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Vra7g3174 498 Gene3D - 355 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3174 Vra-Chr7 51440425 51445010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3174 22 440 Glycoside Hydrolase AT2G01630 76.611 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3174 K19891 - gmx:100778217 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3174 7 51440425 51445010 Vra7g3174 7 51440425 51445010 ECH